Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4838g00087 ATGGAACAAGAGCCGCTTCTGCCGACTGAGGATCTTCGCCGCACTCGCGGGAGTAATCCCATGCTCCGCTCCTCCACCTTACGCGCCACTTTCACCCTCCCCTTAACTCGCTACACCACCCGCCTGATCGCGGCGGAGCACCACCGGATTTTCCTCGGTGATTGTACGGAGAACCCAGCGGAGGACGACGATGACCGACCCCTCGAGGATAGCAGTTGCGCCTATTCGAGGCCCATTTTGGTTCTGGACCTTGTATGGAACCTGGCCTTCGTACTGGTCACTGCTGGTGTACTTCTTTCCACATTTGGCGAGCATCCGTCCACCCCTTTGAGGCTTTGGCTCTGTGGGTATGCCTTTGAGTGCCTTCTGCATATGGGTTTTGTGTGTTTTGAGTATCGTCGGAGGACTCGAGATTTTTACGGTGCTGAGCTTGGGCTTTCCTTTTGCCAGAGTTGGAACAGCAATGTGAAGAAGTTAGAGTCTATGAACACACTGGTGTCATCTATTTGGTGGGTCCTTGGGTTTTATTGGATTGTGGTGGGTGGCCAGCAACTTTTGCAAGACTGTCCTCGTATCTACTGGTTAACAGTGGTCTTTCTTGCCTTTGATGTGTTTTTTATCATCTTTTGCATTGGGATGGTGTGTATAGTTTTCTTTGCTCTCTTTTTTTTCATCCCGATAGTAGCATTAGCTTATGCTATGAGAATCAGAGAGGGTGCATCAGAAGAGGATATCAGGTCTCTTCCTAAGTATAAGTTTAGTCAGTCAAATTCATTGGTGATGGTTGACAACAGTAAGAAGCAAGTTTCTAAAGCAACTATGGGTGCAAGCAATAGCAATCTTGTCAGCGAATTATATCTCAACCCAGATGATTCTGAATGCTGCATATGCCTTTCTCCATACGTTGAAGGGGCAGAACTTTATCGCCTTCCCTGCACGCACCATTTTCATTGTGGATGCATCAGCAGATGGCTTCGGACAAAAGCAACCTGCCCTCTCTGCAAATTCAATATGCTTAGAAGTGATACATTGGTTTGA 1038 0.4778 MEQEPLLPTEDLRRTRGSNPMLRSSTLRATFTLPLTRYTTRLIAAEHHRIFLGDCTENPAEDDDDRPLEDSSCAYSRPILVLDLVWNLAFVLVTAGVLLSTFGEHPSTPLRLWLCGYAFECLLHMGFVCFEYRRRTRDFYGAELGLSFCQSWNSNVKKLESMNTLVSSIWWVLGFYWIVVGGQQLLQDCPRIYWLTVVFLAFDVFFIIFCIGMVCIVFFALFFFIPIVALAYAMRIREGASEEDIRSLPKYKFSQSNSLVMVDNSKKQVSKATMGASNSNLVSELYLNPDDSECCICLSPYVEGAELYRLPCTHHFHCGCISRWLRTKATCPLCKFNMLRSDTLV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4838g00087 345 SUPERFAMILY RING/U-box 286 339 - -
Pral4838g00087 345 ProSiteProfiles Zinc finger RING-type profile. 294 335 IPR001841 -
Pral4838g00087 345 MobiDBLite consensus disorder prediction 1 20 - -
Pral4838g00087 345 PANTHER TARGET OF ERK KINASE MPK-1 68 339 - -
Pral4838g00087 345 Pfam Ring finger domain 293 335 IPR001841 -
Pral4838g00087 345 SMART ring_2 294 334 IPR001841 -
Pral4838g00087 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 341 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4838g00087 Pral-Chr4838 571889 575483 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4838g00087 15 342 C3H Transcription Factor Family AT1G68070 41.279 8.30e-87 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4838g00087 - - pcin:129306192 671.389