Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4838g00080 ATGGCATCTGATCCATGGGTGAGGCAATATAATGAAGCATCAAAACTAGCGGAAGAAGTCAAGGGAATGATTTCTGCCAAGAGCGGACTTCCCCCTTCTGGACCTGAAACACAGCGTCATCTATCGGCAGCCCGGAGAAAAGTAACCATACTGAGGACTAAAGTTGAAATTCTGCAGTCACTTCTCACAACGCTTCCTGGCACGCAATCAATAACAGGAAAAGAAATGAATCGACGCCAAGACTTACTTACTAATATAAGTTCCAAAGCAAATGAGATGGCTGCTACCCTTAACATGTCGGGTCTTGCTAATAGAGATGGCTTGCTAGGCCCTGATAAAAAGTCTGAAGAAGTCATGAAGAAAGCAGCTAGCTTGGACAACCATGGCCTTGTTGGTTTTCAACGACAAATTATTAAAGAGCAAGATGACGAGCTTGAAAAATTGGAAGAGACAGTTACAAGCACCAAACACATTGCGTTGGCTGTTAACGAGGAGCTTAACCTGCATACTAGGCTTCTGGATGATTTGGATGAGCATGTGGATACAACCAATTCCCGCCTACAGATGGCGCAGAGGAGGTTGGCCGTCTTGAGCAAGGGCACTAAAGGCGGCTGCTCTTGCATGATCCTGTTAGTCCTTGTTATCGTAATTATGATAATTGTTGCATGGGCATTGGTTAAATATTTGTAG 690 0.4435 MASDPWVRQYNEASKLAEEVKGMISAKSGLPPSGPETQRHLSAARRKVTILRTKVEILQSLLTTLPGTQSITGKEMNRRQDLLTNISSKANEMAATLNMSGLANRDGLLGPDKKSEEVMKKAASLDNHGLVGFQRQIIKEQDDELEKLEETVTSTKHIALAVNEELNLHTRLLDDLDEHVDTTNSRLQMAQRRLAVLSKGTKGGCSCMILLVLVIVIMIIVAWALVKYL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4838g00080 229 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 135 197 IPR000727 -
Pral4838g00080 229 PANTHER SYNTAXIN 22 217 IPR045242 -
Pral4838g00080 229 Gene3D - 137 199 - -
Pral4838g00080 229 FunFam syntaxin-51 isoform X2 137 199 - -
Pral4838g00080 229 Pfam SNARE domain 172 221 IPR000727 -
Pral4838g00080 229 CDD SNARE_Qc 138 195 - -
Pral4838g00080 229 SMART tSNARE_6 130 197 IPR000727 -
Pral4838g00080 229 Coils Coil 173 193 - -
Pral4838g00080 229 SUPERFAMILY SNARE fusion complex 126 196 - -
Pral4838g00080 229 Coils Coil 131 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4838g00080 Pral-Chr4838 529189 532557 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4838g00080 2 229 SNARE and Associated Proteins AT1G79590 55.652 1.40e-91 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4838g00080 K08503 - qsu:112004203 316.235