Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4838g00077 ATGTCAAATAGTAGAAACACTCATTGGTGTTATAGCTGCAGGAGCCCAGTACAGCTGCGGGGGCGAGATGTGGTTTGCCCTAATTGTAATGAGGGATTTATTCAAGAACTTAATGATATGGTCATCAACCCACTAGACTTCTTTGGCCTAGACAATGCTACTGATGAACGAGACCGGATGTTCAGAATTATGGAAGCCTTCTCTGCCTTTACGAGGCATCGACCGGTAAATAGAAGTCATAGGCATGACATCATAGTTGGATCAGATTCAATTCCTGAACATGGTCCAGGGTATGCTCCTTTGCTGCTCTTTGGTGGCCAGATTCCTGTCAGACTGTCTGGACATGGTGGCTTTGAAGCTCTTTTCAATGGGACTCCTGGAATTGGTCTGATGCAAGGCAATACAGGTGATTATTTTATCGGTCCTGGACTGGAAGAACTGTTCGAACAGCTTTCAGCTAATGACAGGCGAGGTCCTCCTCCAGCTTCCAGGTCCTCAATAGATGCAATGCCTACCATTAAGATCACACATAAGCTTCTTCGTTCAGACTCACATTGTCCAGTATGTCAAGATAAATTTGAGCTGGGGTCAGAAGCAAGGCAAATGCCATGTAAACACATATATCACTCAGATTGTATTGTTCCCTGGTTAGTACAGCATAACTCCTGTCCCGTTTGTCGCCAGGAGTTGCCACCACAAGGATTGAGCAGCAACCGTGGCTCCAATGGTAGAACTAGAAGCAGTTCTGATAGCAGTAGCGGCAATGGAAGGGTAAATGGTAGGGAGAACCAGGGAAGGCGGAACCCATTCTCTTATTTTTGGCCTTTCCGTTCATCTAATTCTAGCAACAATGGAGCAGGGGGAAGCGGCTCACCAACACAGCCTATCCCTGAGAATAGCCACCACGCCGGCTATTCCGGATGGCCATTTGAGTAA 936 0.4679 MSNSRNTHWCYSCRSPVQLRGRDVVCPNCNEGFIQELNDMVINPLDFFGLDNATDERDRMFRIMEAFSAFTRHRPVNRSHRHDIIVGSDSIPEHGPGYAPLLLFGGQIPVRLSGHGGFEALFNGTPGIGLMQGNTGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPTIKITHKLLRSDSHCPVCQDKFELGSEARQMPCKHIYHSDCIVPWLVQHNSCPVCRQELPPQGLSSNRGSNGRTRSSSDSSSGNGRVNGRENQGRRNPFSYFWPFRSSNSSNNGAGGSGSPTQPIPENSHHAGYSGWPFE 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4838g00077 311 MobiDBLite consensus disorder prediction 232 311 - -
Pral4838g00077 311 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Pral4838g00077 311 FunFam E3 ubiquitin-protein ligase RING1-like 149 233 - -
Pral4838g00077 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 233 IPR013083 -
Pral4838g00077 311 Pfam Ring finger domain 185 227 IPR001841 -
Pral4838g00077 311 SUPERFAMILY RING/U-box 166 233 - -
Pral4838g00077 311 MobiDBLite consensus disorder prediction 273 300 - -
Pral4838g00077 311 MobiDBLite consensus disorder prediction 232 266 - -
Pral4838g00077 311 CDD RING-H2_RNF126-like 186 227 - -
Pral4838g00077 311 SMART ring_2 186 226 IPR001841 -
Pral4838g00077 311 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Pral4838g00077 311 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 82 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4838g00077 Pral-Chr4838 496699 499062 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4838g00077 121 231 C3H Transcription Factor Family AT5G01980 42.609 7.18e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4838g00077 K11982 - qsa:O6P43_006301 466.077