Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4838g00056 ATGAGGGAAGAGGAGCCGAATTGGTTATCGCGATGGGAGGAACTCCCTGCTCCGAACGAACTCATGCCCCTCTCCCAAACCCTAATCACTCCTGATCTTGCTTTGGCTTTTGATATCCGAAATCCTCATGTCAATACCTCACAACAACTCCCTCAGGCCCCTCCTCCGTCAAATCCTCTGCCTTCTCCTGGAAATCCTACTCACCCAAACTCCACGGACTTTGCTGATTCCGCTGAATTGGGTTCTGGTATTGGAGGCGAGGAACCCGCTCGCACCCTTAAACGTCCTCGCCTCGTTTGGACTCCACAGCTTCACAAGAGGTTTGTTGATGCTGTGGCACACTTGGGAATAAAGAATGCTGTGCCCAAGACTATAATGCAGTTGATGAGTGTGGATGGATTAACCAGGGAAAACGTGGCTAGCCACTTGCAGAAATACCGGCTTTATCTTAAGCGCATGCAAGGATTATCCGGTGGCGGCAGCGGCGGAGGCAGCGGCGGCGGAGGAGGAGGCGGTCCATTGGCTGCTTCTGCAGATCCTGCCACTGACCATTTGTTTGCTAGTTCGCCTGTGCCACCCCATTTCTTGCACCCAACTAGGCCTAATTCGGATCATTTCTTGCCGTTTGTGCCGGTCCAGACTCTGCAGCACCACCATCACCAGCAGCACATGGTGGCAGCTGCGGCGGCGGCGGCCGCGCATCCACAGTTGCAGCCACAGTATCACAGACAGGTGGGACATTTTGGTTCACCGCCAAACGGGCACTTTGAGCATCCCTTTCTAACAAGGCAGTCTCAAGCTCAGCCACTTCACAGGATGGGAGCCCCAGTGCACAATCCAGTAACCGCTAATTATGTGGAGGACATGGAATCGGCCAACGCGGCAGGAGCGAGAAAGGTTCTTACTTTATTTCCTACTGGGGATGATTGA 930 0.5376 MREEEPNWLSRWEELPAPNELMPLSQTLITPDLALAFDIRNPHVNTSQQLPQAPPPSNPLPSPGNPTHPNSTDFADSAELGSGIGGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGSGGGSGGGGGGGPLAASADPATDHLFASSPVPPHFLHPTRPNSDHFLPFVPVQTLQHHHHQQHMVAAAAAAAAHPQLQPQYHRQVGHFGSPPNGHFEHPFLTRQSQAQPLHRMGAPVHNPVTANYVEDMESANAAGARKVLTLFPTGDD 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4838g00056 309 Gene3D - 92 154 - -
Pral4838g00056 309 NCBIfam myb-like DNA-binding domain, SHAQKYF class 96 148 IPR006447 GO:0003677
Pral4838g00056 309 MobiDBLite consensus disorder prediction 159 199 - -
Pral4838g00056 309 FunFam Two-component response regulator 91 154 - -
Pral4838g00056 309 Pfam Myb-like DNA-binding domain 99 147 IPR001005 -
Pral4838g00056 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 151 IPR017930 -
Pral4838g00056 309 MobiDBLite consensus disorder prediction 45 90 - -
Pral4838g00056 309 MobiDBLite consensus disorder prediction 52 66 - -
Pral4838g00056 309 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 6 268 IPR044841 GO:0003700|GO:0006355
Pral4838g00056 309 SUPERFAMILY Homeodomain-like 92 152 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4838g00056 Pral-Chr4838 388172 390307 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4838g00056 1 309 G2-like Transcription Factor Family AT3G10760 57.955 2.84e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pral4838g00056 Myb_DNA-binding 2.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4838g00056 - - qsa:O6P43_006330 449.899