Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4838g00050 ATGAAGTCCCGGTCCTTAGATTACTGGAGGAGTTACTTTCGAACCGCGAACTCCGATATATTTGATATTATAGACCATGCGATCATGGTGGCCGCCTCTGATTGTCCAAAGGAGTTTCGATTGCGAAGAGATAGAATCGCGGAACGGTTGTTTTCTTGTCGGATGACTCGTTGTTTGGGTTGTGAGCGAGTGGAGTTGGCGGTGTCCGGTGTCGACCAGGAGTACGATGGAGGTTGCAAGAGTGGTTTTGATAGAGACGGAGCTGAGGTGGAAGCAGGTGCAAGTAAAGAGAGCAAGGCCCATAGTAGCAGAGATGACCGTGGAGACATGAACATGAATCACGTTAGCAATTTTAGCTACGGAGAAGCTGAAGCATTGACGGATGAGATTGAAGAAGAGTCTCAACTGGTTGGTGAGACTTTGAGAATCAAGGAAATTCTACATAACTGCGAAGAAGAGTCTGATTCGGAAATATTCGAGTCGTTGAGGAGGCTACAGCTGATGGAACTGACAGTGGATCTTCTAAAGGCGACTGAAATTGGAAAGGCTGTCAATCCTTTCCGGAAGCATGGATCAATGGAGATTCGTCAGCTTGCACGGACTCTTATTGATGGCTGGAAAGAAATGGTGGATGAGTGGGTCAATGCAACCACAACAAATGCAGGTTCTGAAGGTACCCCAGATTCAGTAAATCCATCTGTTGTTGATGAAGAGGAGGAGGAAGGCCTTCCATCACCTCCTATGGATGAAGGGGCTTTCTTTGCAGCTCAAACTGCATCAATGGAGTTATCACAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCGACAGAGTGGGGAATTCATCAAGAACCGGGAAAATGGCAGAAGACCAGCTCTGGACAATCAAAACATAGTAAAGAGGAAACCGCAGGCTTCTGATGGGGCGGAAGCCATGGTCAGAGATAGCAGGAATCAGCAAGCAAAGAAAAACGAGGCTGTTGCGAAGCTAAATAAATCAGCAACTGTTGGTTCTGGTCCTGGCAGACCATTAAAATCTAGCATGCAACGAAGAGAGAATATGGAGCCAAGGATGTTGCAAAAGATGGACAGGAGTGGAGTCCCCAAGAGGCCACTTGCTGGTCCGCAAGATTCGAAGTGTGCAGATGATACTTCAGTCCAAATGAAGCTAGAAGCTACCAAGAGGAAACTTCAGGAGAGTTATCAACAAGCCGAAATTGCCAAGAAGCAGCGAACAATCCAGGTTATGGAGTTGCATGATCTCCCCAAGCAAGGAGGGATTGGCCACAGAGCTACACATTTCAAACCTATGAAGCACCAAAACAGGAATTGGGCCCAGGGACGAAGGTAG 1353 0.4708 MKSRSLDYWRSYFRTANSDIFDIIDHAIMVAASDCPKEFRLRRDRIAERLFSCRMTRCLGCERVELAVSGVDQEYDGGCKSGFDRDGAEVEAGASKESKAHSSRDDRGDMNMNHVSNFSYGEAEALTDEIEEESQLVGETLRIKEILHNCEEESDSEIFESLRRLQLMELTVDLLKATEIGKAVNPFRKHGSMEIRQLARTLIDGWKEMVDEWVNATTTNAGSEGTPDSVNPSVVDEEEEEGLPSPPMDEGAFFAAQTASMELSQFFDGMDDDGNPRQSGEFIKNRENGRRPALDNQNIVKRKPQASDGAEAMVRDSRNQQAKKNEAVAKLNKSATVGSGPGRPLKSSMQRRENMEPRMLQKMDRSGVPKRPLAGPQDSKCADDTSVQMKLEATKRKLQESYQQAEIAKKQRTIQVMELHDLPKQGGIGHRATHFKPMKHQNRNWAQGRR 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4838g00050 450 MobiDBLite consensus disorder prediction 90 114 - -
Pral4838g00050 450 CDD TFIIS_I 139 211 - -
Pral4838g00050 450 Coils Coil 388 411 - -
Pral4838g00050 450 MobiDBLite consensus disorder prediction 424 450 - -
Pral4838g00050 450 MobiDBLite consensus disorder prediction 90 111 - -
Pral4838g00050 450 ProSiteProfiles TFIIS N-terminal domain profile. 138 213 IPR017923 -
Pral4838g00050 450 MobiDBLite consensus disorder prediction 274 291 - -
Pral4838g00050 450 MobiDBLite consensus disorder prediction 433 450 - -
Pral4838g00050 450 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 129 224 IPR035441 -
Pral4838g00050 450 MobiDBLite consensus disorder prediction 349 365 - -
Pral4838g00050 450 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 436 IPR044805 -
Pral4838g00050 450 MobiDBLite consensus disorder prediction 266 385 - -
Pral4838g00050 450 Pfam TFIIS helical bundle-like domain 162 210 IPR017923 -
Pral4838g00050 450 SMART TFS2_5 137 212 IPR003617 GO:0005634
Pral4838g00050 450 MobiDBLite consensus disorder prediction 218 251 - -
Pral4838g00050 450 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 136 224 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4838g00050 Pral-Chr4838 348340 352080 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pral4838g00050 Med26 3.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4838g00050 - - zju:107431544 624.394