Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4838g00043 ATGTTGTCTCAGACATGGAACTGGTTGGCCATAGTGTGTGCCATTTTTGTGCTCACATACCCCATGGCGGAGTCTTACCCACGAGAGGATGAGATCCAAAGCTTGCCTGGCCAGCCACCCGTAACGTTTCAGCAATTTGCTGGCTACATAACCATCGATGATAGAAAACAGAGATCCATGTTTTATTACTTTGTTGAAGCAGAAACAAACCCTACTTCCAAGCCTCTCGTTCTCTGGCTCAATGGAGGTCCGGGCTGCTCTTCTCTCATCGGAGCCTTCTTTGAACACGGGCCATTTACAGTTAGTGCAAAGGGTATCGTGAAGAATAAATATAGTTGGAACAAAGTGGCGAACATGTTATACTTGGAATCACCGGCAGGTGTTGGATTCTCTTATTCTGTCAACAAGTCCATCTATGCTTCCTACAACGATGAGATCATAGCGCGAGACAACTTGGCATTCCTGCAGTGTTGGTTTGCGAAGTTCCCAAAATACAAGAACAGATACTTGTTCATAACGGGCGAGAGTTACGGAGGGCACTATGTGCCACAGCTTGCACAGCTTATTATTCAAACCAAGGCCATCCCCAACCTCAAGGGTATAGCGATAGGGAATCCCTTGCTAGAGTTTGAGAATGACTTCGATTCGAAGGTTGATTACTATTGGTCCCATGGGTTAATATCAGATTCAACTTGCAACGCTATGAATAGAGTGTGTAAGGGTTCTGAGTATGTAAGACAATTGATACAGGGTAAGATCTCTGACACTTGCAAGAAACTCTATGGTAGTGTGGAAACTGCGTTTGCTCATTCGGTAGACCAAAATAATATTCTGGGCCAAACTTGCAAACCTTTAAATTTATCCACGGCAGCCATCCTCGCTCACCCACCAACCCCAATAATGTCTCAGCTTTTGCCGCCATATACAAACAATCGCCAGGGAGATGATGGCGTCTGTGAACTCAAACTGACGTTCTTATCCAACTATTTAAATAGGAAGGACGTACAGATGGCTTTGCATGCGCAGCTTGTTGGAGCAAACAGATGGGCCTATTGTAACAAACCCATCTATACAAATTATTCAGTTGCAAGCTGGGAAATCTCGACGATTAAGGTAGTAGGCTGGCTCGTGAAGTCAGGCATAAGGGTGGTGGTTTACAGTGGAGACCAGGATACAAAAATTCCATTCATAGGAACTCGACGTTTGGTGAGGGAATTAGCTAAAGAATTGAAACTCAAAGTAACGACAGAGTACACACCCTGGTTTGTGGGTGAAAAGCTGCAGGTTGGAGGGTGGACAGAAGAGTATGGGAAATGGTTAAGTTATGCATTGATAAGGGGGGCTTCCCATGTAGCCCCGGCCACTCAACCAAAGAGGGCATTTATGCTGTTTGATGCCTTCCTTCAAGGAAAACTACTTCCTATCCCCCAACACTGA 1437 0.4516 MLSQTWNWLAIVCAIFVLTYPMAESYPREDEIQSLPGQPPVTFQQFAGYITIDDRKQRSMFYYFVEAETNPTSKPLVLWLNGGPGCSSLIGAFFEHGPFTVSAKGIVKNKYSWNKVANMLYLESPAGVGFSYSVNKSIYASYNDEIIARDNLAFLQCWFAKFPKYKNRYLFITGESYGGHYVPQLAQLIIQTKAIPNLKGIAIGNPLLEFENDFDSKVDYYWSHGLISDSTCNAMNRVCKGSEYVRQLIQGKISDTCKKLYGSVETAFAHSVDQNNILGQTCKPLNLSTAAILAHPPTPIMSQLLPPYTNNRQGDDGVCELKLTFLSNYLNRKDVQMALHAQLVGANRWAYCNKPIYTNYSVASWEISTIKVVGWLVKSGIRVVVYSGDQDTKIPFIGTRRLVRELAKELKLKVTTEYTPWFVGEKLQVGGWTEEYGKWLSYALIRGASHVAPATQPKRAFMLFDAFLQGKLLPIPQH 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4838g00043 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 158 183 IPR001563 GO:0004185|GO:0006508
Pral4838g00043 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 122 132 IPR001563 GO:0004185|GO:0006508
Pral4838g00043 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 109 121 IPR001563 GO:0004185|GO:0006508
Pral4838g00043 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 440 453 IPR001563 GO:0004185|GO:0006508
Pral4838g00043 478 ProSitePatterns Serine carboxypeptidases, histidine active site. 440 457 IPR033124 GO:0004185
Pral4838g00043 478 Gene3D alpha/beta hydrolase 25 473 IPR029058 -
Pral4838g00043 478 Pfam Serine carboxypeptidase 37 470 IPR001563 GO:0004185|GO:0006508
Pral4838g00043 478 FunFam Carboxypeptidase 25 474 - -
Pral4838g00043 478 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 457 IPR001563 GO:0004185|GO:0006508
Pral4838g00043 478 SUPERFAMILY alpha/beta-Hydrolases 24 473 IPR029058 -
Pral4838g00043 478 ProSitePatterns Serine carboxypeptidases, serine active site. 172 179 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4838g00043 Pral-Chr4838 305972 331900 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4838g00043 329 473 Calmodulin-binding Proteins AT2G22960 27.586 1.14e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4838g00043 K16297 - gmx:100819443 508.449