LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4838g00036	ATGCCTTACCTTGTCCGAGAGAAACTATTTATTGGTGATATCAGTGACGCTGCGGCAATCCTTCAAAATGGTAGCGATGAAATCACGCATATTTTATCGGTTCTTACCTCTGCTTCAATATCATTCTTTTCCGAATGGCGAAGTAGCCTAACGATCCCGGCGAAGGAAATTAAGAAGGTATATGTGGGTGGTGATCATGTTGGTGCTCCTGATGATGACTTGGGTGATATATCAAGGAGTCCGTTGTCACCGGCGAACCTTTTGTACTCGTTGGAATATGCAGGTAAGGATTTGAAGTTGGTCAGGATGGCTGTCCCTCTGAGGGATACAGAAAATGAAAATTTGTTGGACTACTTGGATGTTTGCCTTAATTTTATTGATCGAAGTAGGAAAGATGGTTCTGTTCTGGTGCACTGCTTTGCTGGAGTATCAAGAAGTGCAGCAATCATTACAGCATATCTGATGAGATCTGAACATCTATCTCAAGAAGATGCCCTTCATTCATTAAGGCAGAGTTGTGAATTCGTCTGCCCCAATGATGGATTTCTAGAACAGTTAAAAATGTTTGAGGAGATGGGCTTCAAGGTAGATCGCTCTAGCTCTATATACAGGCGCTTTCGTTTGAGAGTACTGGGTAAGAATTATAACTCGGGGGCGAGAATAGACAGTTCTAAACTTGGAGCTGATCCTGGCATGCCTGTTAGTGTTGCTTCAGAAGTAGAAGGAGCTCCAAGAGCCAGAAATAATCATAGTCCTACATATCGCTGTAAAAAGTGTCGGCGTGTAGTTGCATTGAAGGAACATGTTGTAGACCATGTTCCAGGTGAAGGTGATGCATCAAGCGAGTGGCAGAAGTGGAGAAGTGACAGCCTGTTTAACAAATGCAATGAATATGAGTGTTCTTCCATATTTATTGAGCCACTTCAATGGATGAAAGCAGTTGAGGAAGGTGCATCGGAGGGGAAGTTGAACTGTGCCCACTGTGACGCCCGCTTGGGAAACTTCAATTGGTTTGGCATACAATGCAGCTGCGGAAGCTGGATATCCCCAGCCTTTCAGATCCACAAGTGCCGAGTGGATGCAAGCCCTATCTAA	1095	0.442	MPYLVREKLFIGDISDAAAILQNGSDEITHILSVLTSASISFFSEWRSSLTIPAKEIKKVYVGGDHVGAPDDDLGDISRSPLSPANLLYSLEYAGKDLKLVRMAVPLRDTENENLLDYLDVCLNFIDRSRKDGSVLVHCFAGVSRSAAIITAYLMRSEHLSQEDALHSLRQSCEFVCPNDGFLEQLKMFEEMGFKVDRSSSIYRRFRLRVLGKNYNSGARIDSSKLGADPGMPVSVASEVEGAPRARNNHSPTYRCKKCRRVVALKEHVVDHVPGEGDASSEWQKWRSDSLFNKCNEYECSSIFIEPLQWMKAVEEGASEGKLNCAHCDARLGNFNWFGIQCSCGSWISPAFQIHKCRVDASPI	364

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4838g00036	364	Pfam	Dual specificity phosphatase, catalytic domain	99	191	IPR000340	GO:0008138\|GO:0016311
	Pral4838g00036	364	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	5	195	IPR029021	-
	Pral4838g00036	364	SMART	dsp_5	1	192	IPR020422	GO:0006470\|GO:0008138
	Pral4838g00036	364	FunFam	Dual specificity protein phosphatase 12-like	4	212	-	-
	Pral4838g00036	364	ProSitePatterns	Tyrosine specific protein phosphatases active site.	137	147	IPR016130	GO:0016311\|GO:0016791
	Pral4838g00036	364	Gene3D	Protein tyrosine phosphatase superfamily	4	212	IPR029021	-
	Pral4838g00036	364	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	116	171	IPR000387	GO:0016311\|GO:0016791
	Pral4838g00036	364	PIRSF	DUSP12	90	364	IPR016278	GO:0006470\|GO:0008138
	Pral4838g00036	364	PIRSF	DUSP12	3	46	IPR016278	GO:0006470\|GO:0008138
	Pral4838g00036	364	CDD	DSP_DUSP12	4	197	-	-
	Pral4838g00036	364	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	1	195	IPR020422	GO:0006470\|GO:0008138
	Pral4838g00036	364	PANTHER	DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER	1	361	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4838g00036	Pral-Chr4838	243002	246986	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4838g00036	100	191	Protein tyrosine phosphatase (PTP) family	AT3G06110	37.634	4.67e-15	70.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4838g00036	K14819		-	qsa:O6P43_010054	565.074