Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4838g00025 ATGTCCTCGGATGACTCTCTCAGATCTCTATCTATGGACTATCTCAACCTGCTCATCAATGGCCAAGCCTTCAGCGACGTCACTTTCAGCGTGGAGGGTCGCCTGGTTCACGCCCACCGCTGCATCCTGGCGGCTCGAAGCCTCTTCTTCAGGAAATTCTTCTGCGGTCCTGACCAACCGTCCGGGCTGGACCCGGCCTCAGGGTCGCGGGTGAACTCATCTACCTCTCCGTCGAGGCCCGGGGTCATTCCGGTGAACTCTGTGGGCTATGAAGTGTTTCTGCTTCTGCTTCAGTTCTTGTACAGTGGCCAAGTCTCTATTGTGCCTCAGAAGCACGAGCCCAGGCCTAATTGCGGCGAAAGAGGTTGTTGGCACACGCATTGCACCTCTGCCGTTGATCTCGCCCTTGATACTCTCGCTGCCGCTAGATCTTTTGGCGTTGAGCAGCTCGCATTGCTTACTCAGAAACAATTAGCCAGCATGGTTGAGAAGGCCTCCATTGAAGATGTGATGAAAGTGCTTCTAGCTTCTACAAAGCAAGACATGCACCAACTCTGGACTACTTGCTCACACCTTGTTGCCAAGTCCGGTCTCCCTCCTGAAGTCCTCGCCAAACACCTTCCCATCGATGTCGTTGCTAAAATCGAAGAGCTTCGTCTCAAAACCTCCCTCGTTCGTCGCTCCCTAATCCCCCACCACCACCCCCACCACCATCACGACCATATCAGCGCCACCGCAGATCTCGAGGATCAGAAAATCCGCAGAATGAGAAGGGCACTTGACTCCTCCGATGTTGAACTCGTGAAGCTCATGGTTATGGGGGAAGGCTTAAATCTGGACGAAGCATTGGCCTTACACTACGCCGTAGAGAACTGCAGCCGCGAAGTCGCCAAGGCCTTGCTGGAGCTGGGTGCAGCTGACGTCAACTACCGCGCCGGACCAGCCGGCAAAACCCCACTTCATCTTGCCGCCGAGATGGTGTCACCGGACATGGTGGCGGTCCTCCTCGACCACCACGCCGACCCGAACGTCCGGACCGTAGATGGGGTTACCCCTCTTGACATCCTGAGAACCCTAACTTCTGATTTTCTGTTCAAGGGGGCCGTCCCTGGGCTTGCTCATATTGAACCCAACAAATTAAGGTTGTGTTTGGAACTGGTCCAATCCGCAGCTCTAGTGCTGTCCCGTGAGGAAGGCAATGCGAATCCTCCTTCGTCAACGGCCATTTATCCCCCAATGAACGAAGACCATAACAGCAGTAGTAGCAACAGCAATATCGCGAACCTTAATCTGGACGCCAGGCTGGTTTACCTGAACCTGGGTGCGACGTCGTCGTCGGGGCAAATAGGTTCGAGATTGGACGGCGACGAAGATAGCAGCCACAATAGCCAGAACCGTCATGGCTCCCAAGGTGGATCATGTGACCCAACAATGTACCACCATTCTCATGACTATAATTAA 1461 0.5435 MSSDDSLRSLSMDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDQPSGLDPASGSRVNSSTSPSRPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARSFGVEQLALLTQKQLASMVEKASIEDVMKVLLASTKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKTSLVRRSLIPHHHPHHHHDHISATADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVAKALLELGAADVNYRAGPAGKTPLHLAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLAHIEPNKLRLCLELVQSAALVLSREEGNANPPSSTAIYPPMNEDHNSSSSNSNIANLNLDARLVYLNLGATSSSGQIGSRLDGDEDSSHNSQNRHGSQGGSCDPTMYHHSHDYN 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4838g00025 486 Pfam Ankyrin repeats (3 copies) 263 345 IPR002110 GO:0005515
Pral4838g00025 486 ProSiteProfiles Ankyrin repeat profile. 315 347 IPR002110 GO:0005515
Pral4838g00025 486 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 485 IPR044284 GO:0099402
Pral4838g00025 486 MobiDBLite consensus disorder prediction 446 486 - -
Pral4838g00025 486 FunFam regulatory protein NPR5 isoform X1 4 195 - -
Pral4838g00025 486 CDD BTB_POZ_NPR_plant 12 162 - -
Pral4838g00025 486 SMART BTB_4 25 162 IPR000210 GO:0005515
Pral4838g00025 486 Gene3D Potassium Channel Kv1.1; Chain A 5 195 IPR011333 -
Pral4838g00025 486 FunFam regulatory protein NPR5 isoform X2 246 363 - -
Pral4838g00025 486 SMART ANK_2a 280 310 IPR002110 GO:0005515
Pral4838g00025 486 SMART ANK_2a 315 344 IPR002110 GO:0005515
Pral4838g00025 486 Gene3D - 247 363 IPR036770 -
Pral4838g00025 486 SUPERFAMILY Ankyrin repeat 274 358 IPR036770 -
Pral4838g00025 486 MobiDBLite consensus disorder prediction 399 424 - -
Pral4838g00025 486 MobiDBLite consensus disorder prediction 396 424 - -
Pral4838g00025 486 ProSiteProfiles BTB domain profile. 25 109 IPR000210 GO:0005515
Pral4838g00025 486 SUPERFAMILY POZ domain 7 190 IPR011333 -
Pral4838g00025 486 Pfam Domain of unknown function (DUF3420) 197 257 IPR024228 -
Pral4838g00025 486 Pfam BTB/POZ domain 16 110 IPR000210 GO:0005515
Pral4838g00025 486 ProSiteProfiles Ankyrin repeat region circular profile. 315 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4838g00025 Pral-Chr4838 181461 184093 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pral4838g00025 BTB 1.4e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4838g00025 K14508 - zju:107433767 835.484