Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4836g00031 ATGAGGAGAGTTTCAACAATCAAAGAGCTGCATGATGGTACAGACAGGTGGAGAATTGTTGCAAAAGTATTTCGTAAATGGAATGTCTACCAGAAGTCAGCTCCTGCAGAGTTATTTTGCATATCTATGGTGCTTATAGATGAGGAAGGCCATAAAATTCAAGCCAGTGTGATGAATAACATATTGCATGAGCAATATCGAAATAGCTGCATAGAAGGGACTACTTATTTCTTTGCCAACTTTGTTGTGTCATCTAATGTTACTCAATATAGAGCAACTAATCACCCATTCAAGATTAATTTCACACAACAGACATTCGTCAGAATTGAGCCTAATGTCAATCCATCCTTATCTTTCTCTTTGATGAAGATACAGGATATATTGAAGAATACTGAGCACAATCATGTTGATTATCTTATTGATGTAATTGGCTTTGTCAAGTCACTTGGTCACTTGGAGGAATATAGGAAGGATAACGACATAAAGCACAAGCTCAAGATGGCGTTAGTTGATCAAGAGGACAATGAGATTGAATGCATTCTATTTGATGAGTGTTCAACAAATGCATACACATCCTACTTGGAGAACATGGACTCACCTGTGGTTGCCTTATTTAATCTTGCAAGAGTGTCTTTCGCTGATGATGGATCACCTCAGATCTGTAGCTCATTCAACGCCACTAGGGTTTACTTCAATCCCATAAACAATCAGGTGAAGGAATTCATTGAAAGTGCAAAAGACAAATCTTCACCTGTGCTGTCCTATGTAAGCCAACCTGCCCCAACCCAATTATCTCAGCCATCTGTTGCAAATATTTTGAACAAAAACAAGAAAGTGGCAATTTCTGAAATTCCTCACCAAAACACGGTCGATCCATTCATTATTAAATGCACAGTTATGAAACTAGAGACAAGACATGGATGGATGTATGATGGATGTAGTAAGTGTGCAGCTAAGCCAAAGGATCAAAACGGTTCCTTATATTGTGCAACATGCAAGAAGGCACCTGAGTCTGTGGATCCAAAGTTGAAGGTAACATACATTGTTCATGATTCATCTGGAAAAGTTTCGGTCACTTTCTGGGATAAGTTAGCTGTCCAGTTATTTGGCAAGACTGCACCTGAGTTGAAAGTCTCGCTACCAGAGGGAGACGAGTTTGAGTTTCCTGAAGCATTGGATAATATAGTTGGCAGAAAAATGATCCTGAAGCTGAAACTTAACGAGTACAACAAGAAATTTCCACATTCCAGTATTAGTGTTATTCAGTACACTAATTGTGAGGACTTGATGGACCAGTTCACTCAGGCTTCTTCTGATGTTAGCACGGGAAGTGCCGGCATAGCTGCTGAGGCTGTATCTGAGACCAATGATGGAGAAGTAACTCCACAAGCAGAACAAACCACTGGCTTTCACTCATCAACTCCTGATCATGTTGACACTGATGACAATATAACATTGTCTAAGCTTTCAGAGTGCTTGAATCCTATGCCAAACAAAGGCAAAAGAAAGGTCATTGCCAAGAAAGCAATAATGTTAGATGAACCAAGTAGCAGCAGCAAAAACTCATCCACCGTCTCTACTGGGGAGCCTGTTGTCAAAGTGATTAAGCAAGAGAAGATGTAA 1623 0.398 MRRVSTIKELHDGTDRWRIVAKVFRKWNVYQKSAPAELFCISMVLIDEEGHKIQASVMNNILHEQYRNSCIEGTTYFFANFVVSSNVTQYRATNHPFKINFTQQTFVRIEPNVNPSLSFSLMKIQDILKNTEHNHVDYLIDVIGFVKSLGHLEEYRKDNDIKHKLKMALVDQEDNEIECILFDECSTNAYTSYLENMDSPVVALFNLARVSFADDGSPQICSSFNATRVYFNPINNQVKEFIESAKDKSSPVLSYVSQPAPTQLSQPSVANILNKNKKVAISEIPHQNTVDPFIIKCTVMKLETRHGWMYDGCSKCAAKPKDQNGSLYCATCKKAPESVDPKLKVTYIVHDSSGKVSVTFWDKLAVQLFGKTAPELKVSLPEGDEFEFPEALDNIVGRKMILKLKLNEYNKKFPHSSISVIQYTNCEDLMDQFTQASSDVSTGSAGIAAEAVSETNDGEVTPQAEQTTGFHSSTPDHVDTDDNITLSKLSECLNPMPNKGKRKVIAKKAIMLDEPSSSSKNSSTVSTGEPVVKVIKQEKM 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4836g00031 540 Gene3D - 114 252 IPR012340 -
Pral4836g00031 540 Pfam Replication factor-A C terminal domain 293 410 IPR013955 -
Pral4836g00031 540 CDD RPA1_DBD_C 293 410 IPR047192 -
Pral4836g00031 540 Gene3D - 265 435 IPR012340 -
Pral4836g00031 540 CDD RPA1_DBD_B_like 141 244 - -
Pral4836g00031 540 SUPERFAMILY Nucleic acid-binding proteins 119 244 IPR012340 -
Pral4836g00031 540 CDD RPA1_DBD_A_like 18 107 - -
Pral4836g00031 540 MobiDBLite consensus disorder prediction 456 474 - -
Pral4836g00031 540 PANTHER OS03G0429900 PROTEIN 5 489 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pral4836g00031 540 SUPERFAMILY Nucleic acid-binding proteins 5 114 IPR012340 -
Pral4836g00031 540 MobiDBLite consensus disorder prediction 514 530 - -
Pral4836g00031 540 MobiDBLite consensus disorder prediction 454 481 - -
Pral4836g00031 540 Pfam Domain of unknown function DUF223 43 134 IPR003871 -
Pral4836g00031 540 MobiDBLite consensus disorder prediction 512 540 - -
Pral4836g00031 540 Gene3D - 1 108 IPR012340 -
Pral4836g00031 540 SUPERFAMILY Nucleic acid-binding proteins 281 410 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4836g00031 Pral-Chr4836 247880 250479 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4836g00031 2 410 Core DNA Replication Machinery Family AT5G08020 21.882 9.70e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4836g00031 - - pcin:129290097 518.464