Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4836g00016 ATGCGTGGAAGAGAGGTAAATTTGCTGAAGAAGAGGAAGTGGTCTCAAAACAGTGACGACGAAGACAAGGGTAATTTTTGTGGAAAACACATGACTGAGGAGCGATATCGATCAATGCTTGGGGAACACATTCAAAAATACAGGAGGAGGTATAAAGATACCTCGTCTAGTCCTGCCCAAAATCGTGCTGGTGCTCAACTTCTTAAAAGTAACATAGGTTTGAAAGCGCGGAAGTTAGTGAATGAGCATCGAGGTGGAATACATGCTCTGGATGCTACATCTGAGTGGCCTAATGATATTAATGCTCAGAAACCTGTAAACTACCGTGATGCAGAATTCAGACAGCAATATGGACCTGACAGAACCATCTATGAACCAGCTTCTTTAGATATTGGAGATGGCGTTACCTACAAGATCCCTCCTACTTATGATAAGTTATCAGCGATGCTGAACCTTCCAAGTTTCTCTGATATCCTAGTTGAGGAATTTTACTTGAAAGGTACCTTGGATTTGGGATCCTTGGCTGCAATGATGGCTTCTGATAAGAGGGGTGGGACTAGAAACCGAGCAGGCATGGGGGAAACCTTACCTCAATACGATTCACTTCAGGCACGATTGAAGGCCCTGTCAGCATCTAATTCACCTCATCAATTTAGTCTGAAAGTATCCGACATTGGTTTGAATTCTTCCATCCCAGAGGGAGCTGCTGGAAATATTAAACGATCTATTTTGTCTGAGGGAGGTGTATTGCAGGTTTATTATGTGAAGGTTTTAGAGAAAGGTGACACGTATGAGATCATTGAAAGAAGCCTACCTAAGAAGCAAAAGGTAAAGAAAGACCCTTTGATGATTGAGAAGGAGGAAATGGAGAGAATTGGAAAAGTCTGGGTAAATATTGTGAGAAGAGACATACCTAAGCATCATAGGTTTTTTACTGGCTTCCATCGAAAGCAAATTGTTGATGCCAAGAGGTTCTCAGAGAACTGTCAAAGAGAGGTCAGAATGAAAGTGAGTAGATCACTTAAATTCATGAAGAGTGCATCCATTCGCACCCGGAAACTAGCTAGAGATGTCTTGCTGTTTTGGAAACGAGCAGATAAGGAGATGGCAGAATTGAGGAAAAAGGAGGAGAAAGAAGCTGCAGAAGCTTTGAGGCGGGAACAGGAGCTTCGAGAAACAAAGAGGCAGCAGCAAAGGCTGAATTTCCTTATACAGCAAACTGAGTTATACAGTCACTTTATGCAGAACAAGTCAAACTTGCTGTCCTCTGATGCTTTACCTATGGTAGATGAAAAAGCAGATGATCAAGCTGCAGAACCTGGCTCTTCAGATGTTAGGCCTTGTGAGGAGGAAGATCCTGAAGAGGCTGAACTGAAGAAGGAAGCTCTGAAAGCTGCTCAAGAAGCTGTCTCTAAGCAGAGAAAGTTGACAAGTGCTTTTGATGATGAATGCTTGAGGCTGCGTCAGGCTGGTGAAACTGATGCACTTTCACAGGAAGTTGCAGGAGCAAGTAACATTGATTTGCAAACCCCCTCAACCATGCCTGTGGCATCAACAGTTCGCACACCAGAAATGTTTAGAGGCTGTCTTAAAGAATATCAACTAAAAGGTCTTCAGTGGTTAGTTAATTGTTATGAGCAGGGTCTGAATGGTATACTTGCTGATGAAATGGGACTTGGAAAGACCATTCAAGCCATGGCTTTTTTAGCCCATTTAGCTGAGGAGAAAAATATATGGGGACCATTTTTGGTTGTTGCACCTGCATCAGTATTGAACAACTGGAATGAAGAACTTGAGCGCTTCTGCCCTGAAATGAAAGCTCTTCCTTATTGGGGTGGGCTTCATGAGCGGACGGTACTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAAGCGAAATTCCACATTCTCATTACAAGCTACCAGCTACTAGTATCTGATGAGAAGCATTTTCGGCGTGTGAAATGGCAGTACATGGTATTAGATGAAGCCCAGGCAATCAAAAGTGCAAACAGTATAAGATGGAAGACACTCCTCAGTTTTAATTGTCGGAATCGCTTGCTGCTGACTGGTACACCAATTCAAAATAATATGGCAGAACTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTCGATAGCCATGAACAGTTTAATGAATGGTTTTCAAAAGGAATTGAGAATCATGCAGAACATGGAGGTACTTTGAATGAACATCAACTTAACAGATTGCACTCTATTCTAAAGCCCTTCATGCTGCGACGAGTTAAAAAAGATGTAATATCCGAACTGACTAAGAAAATAGAGGTTACAGTGCACTGCAAGTTGAGTTCTCGCCAGCAAGCTTTCTATCAAGCAATCAAGAATAAAATATCTCTTGCTGAGTTGTTTGATAGTAATCGTGGGCAGCTCAATGATAAGAGAATTCTGAATTTAATGAATATTGTTATTCAACTAAGAAAGGTTTGCAACCATCCAGAGTTGTTTGAGAGGAGCGAGGGAACCACATTCTATAATTTTGCAGAGATTCCAAATTCCCTCCTCCCTCCTCCATTTGGGGAGTTGGAGGATGTATACTTTTCTGGGGCTCACAATCCAATATCATACAAGGTGCCAAAACTTGTCCATCAAGAAATCATGCCAGGTTCTAAATTGCTCAATTCAACAATTGCTCGTGGTGTTGGCAGAGAACTTTTTCAAAGACATTTTAATATTTATAGCCCGGAGAATGTTTTTCAATCTATCTTCTCTGAAGGGAATAAATCAAATGCGTCGTTTATTAAAAGTGGAACTTTTGGTTTTACCCATTTGATGGATTTGTCCCCGCAAGAAGTGATGTTTTCAGCTACTGGTTCTTTTATGGAGCAAGTACTGTTTTCTATGGTGAGATGGGAGCAGAAATTTATCAATGAAGTTGTGGACTTTGTAACGGAGACTTTAGATAATGATCCTGAATACAGTTCCCTTGAAAGGGGAAAAGTGAGGGCTGTTACACGAATGTTATTGGTGCCAACAAAATCTGAGACAAAAATTTTTCAAAGAACATTTGCTACTGGACCCAGCCATGCCCCTTTTGAGGCATTGGTTGTCCCATATCAAGATAGGATTATATCGAATGCAAGACTTATTCACTCAGCATACACATTTATCCCTCGGACTAGAGCTCCCCCAATTGTTGCCCACTGCTCAGACCGAAGCTTCTCTTATAAAACACTTGAAGAGTTGCATGACCCATGGGTTAAGAGATTGCTTGTGGGATTTGCACGTACATCTGAGTTTAATGGACCTAGAAAGCCAGATGGTCCTCCCCATCATTTAATTCAAGAGATTGATTCTGAACTACCAGTTGCACAGCCTGCTCTTCAGTTAACCTACAAAATTTTAGGTTCGTCTCCCCCCATGCAAAATTTTGACCCAGCAAAGTTGCTCACTGACTCTGGGAAGCTTCAAACGCTTGACATATTATTAAAACGCTTGCGGGCTGAAAATCACCGTGTTCTCTTGTTTGCTCAGATGACTAAGATGCTGAATATTCTTGAGGACTACATGAACTATAGAAAATATAGATATTTTAGACTCGATGGATCGTCATCCATTCAGGACCGCAGAGACATGGTTAGAGACTTCCAGCAGAGGAATGATGTTTTTGTGTTCTTACTTAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACGGCTGCTGACACAGTAATCTTTTATGAGAATGATTGGAATCCCACATTGGATCAGCAGGCAATGGATAGAGCTCATCGATTGGGTCAAACAAAAGATGTCACTGTTTACAGACTTATATGTAAAGAGACAGTTGAAGAAAAGATTCTTCTTAGAGCAAGTCAGAAAAGCACTGTACAGAACCTCGTCATGACTGGTGGTTCTACTGATGATATTTTAGCTCCTGAGGATGTTGTATCTTTGCTTCTGGATGATGTGCAGTTAGAGCAGAAATTCAAAGAAATTCCTCTTCAGGTGAAGGATAAACAAAAGAGGAAACAAACTGTGAAGGGTATACGGGTAAATGAAGATGGTGATGCGTCTCTGGAAGATATAACAGACTCTGGAGCACAGGGCCCAGATAATGATATTCCTCTTGACCCAGAGGGATCAAAGCCCAGTAATAAAAAGAGGAAGGCTGCCTCTGACAAGCAAACCGCATCAAGGGCAAAGAATTTTCAAAAGATGAATGAGTTTAGTAATACAATGCCGATGGACTATGAGGTGTATGATGCTACTCAAGGTACAGATCCAGTGGTCCAGAAACCCAAGAGACCAAAGAAGGCAAAGAAAGTTGGGAACGACAAGTTTGACGACTCTTTTGCTGGTACAGTCGATATATTCTCAGAGCAGACCCAATAG 4383 0.4155 MRGREVNLLKKRKWSQNSDDEDKGNFCGKHMTEERYRSMLGEHIQKYRRRYKDTSSSPAQNRAGAQLLKSNIGLKARKLVNEHRGGIHALDATSEWPNDINAQKPVNYRDAEFRQQYGPDRTIYEPASLDIGDGVTYKIPPTYDKLSAMLNLPSFSDILVEEFYLKGTLDLGSLAAMMASDKRGGTRNRAGMGETLPQYDSLQARLKALSASNSPHQFSLKVSDIGLNSSIPEGAAGNIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPLMIEKEEMERIGKVWVNIVRRDIPKHHRFFTGFHRKQIVDAKRFSENCQREVRMKVSRSLKFMKSASIRTRKLARDVLLFWKRADKEMAELRKKEEKEAAEALRREQELRETKRQQQRLNFLIQQTELYSHFMQNKSNLLSSDALPMVDEKADDQAAEPGSSDVRPCEEEDPEEAELKKEALKAAQEAVSKQRKLTSAFDDECLRLRQAGETDALSQEVAGASNIDLQTPSTMPVASTVRTPEMFRGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPEMKALPYWGGLHERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKHFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTKKIEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNDKRILNLMNIVIQLRKVCNHPELFERSEGTTFYNFAEIPNSLLPPPFGELEDVYFSGAHNPISYKVPKLVHQEIMPGSKLLNSTIARGVGRELFQRHFNIYSPENVFQSIFSEGNKSNASFIKSGTFGFTHLMDLSPQEVMFSATGSFMEQVLFSMVRWEQKFINEVVDFVTETLDNDPEYSSLERGKVRAVTRMLLVPTKSETKIFQRTFATGPSHAPFEALVVPYQDRIISNARLIHSAYTFIPRTRAPPIVAHCSDRSFSYKTLEELHDPWVKRLLVGFARTSEFNGPRKPDGPPHHLIQEIDSELPVAQPALQLTYKILGSSPPMQNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSSIQDRRDMVRDFQQRNDVFVFLLSTRAGGLGINLTAADTVIFYENDWNPTLDQQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSTDDILAPEDVVSLLLDDVQLEQKFKEIPLQVKDKQKRKQTVKGIRVNEDGDASLEDITDSGAQGPDNDIPLDPEGSKPSNKKRKAASDKQTASRAKNFQKMNEFSNTMPMDYEVYDATQGTDPVVQKPKRPKKAKKVGNDKFDDSFAGTVDIFSEQTQ 1460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4836g00016 1460 Pfam DNA-binding domain 290 419 IPR020838 GO:0003677
Pral4836g00016 1460 FunFam Putative DNA helicase INO80 502 780 - -
Pral4836g00016 1460 Pfam SNF2-related domain 545 832 IPR000330 GO:0005524|GO:0140658
Pral4836g00016 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 760 1303 IPR027417 -
Pral4836g00016 1460 MobiDBLite consensus disorder prediction 1337 1406 - -
Pral4836g00016 1460 MobiDBLite consensus disorder prediction 1377 1392 - -
Pral4836g00016 1460 Gene3D - 1121 1362 IPR027417 -
Pral4836g00016 1460 MobiDBLite consensus disorder prediction 432 447 - -
Pral4836g00016 1460 MobiDBLite consensus disorder prediction 1421 1460 - -
Pral4836g00016 1460 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1154 1337 IPR001650 -
Pral4836g00016 1460 Pfam Helicase conserved C-terminal domain 1154 1263 IPR001650 -
Pral4836g00016 1460 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 542 713 IPR014001 -
Pral4836g00016 1460 MobiDBLite consensus disorder prediction 1337 1354 - -
Pral4836g00016 1460 Coils Coil 367 400 - -
Pral4836g00016 1460 SMART helicmild6 1180 1263 IPR001650 -
Pral4836g00016 1460 CDD SF2_C_SNF 1142 1274 - -
Pral4836g00016 1460 Gene3D - 526 767 IPR038718 -
Pral4836g00016 1460 MobiDBLite consensus disorder prediction 1 26 - -
Pral4836g00016 1460 MobiDBLite consensus disorder prediction 432 455 - -
Pral4836g00016 1460 FunFam DNA helicase INO80-like protein 1122 1372 - -
Pral4836g00016 1460 SMART ultradead3 526 721 IPR014001 -
Pral4836g00016 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 514 758 IPR027417 -
Pral4836g00016 1460 PANTHER HELICASE SRCAP-RELATED 29 473 - -
Pral4836g00016 1460 Gene3D - 768 839 IPR027417 -
Pral4836g00016 1460 ProSiteProfiles DBINO domain profile. 295 420 IPR020838 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4836g00016 Pral-Chr4836 147621 159499 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4836g00016 583 831 RAD5 or RAD16-like Gene Family AT1G61140 22.903 4.16e-12 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral4836g00016 SNF2_N 4.6e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4836g00016 K11665 - gmx:100780615 2316.58