Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4836g00006 ATGGGCACTGCGAGGAGGCAATTGAAGGTCATGCTATGGAAGAACTGGCTTCTCAAAATTCGTCATCCGTTCGCAACAAGTGCCGAGGTTTTGCTCCCAACTTTAGTGATGTTGCTGTTAATAGCTGTAAGGACTCGGGTTGATACACAAATTCATCCGGCGCAACCGCACATCCGAGAAGAGATGTATGTAGAAGTGGGCAGGGGTATTTCTCCTAGCTTCCAACAAGTTTTGGAAGTTTTGTTGGCCAAGGGAGAGTATATTGCCTTTGCCCCTAATACAACAAAGACTGAGCAAATGATAGACATAATGTCAATAAAATTTCCTCTCTTGAAGCTTGTCAGTAAAATATACAAAGATGAGGCAGAGCTGGAGACTTACATACGCTCAGATGTTTATGGTAGCTGCAATCAAGCAAGGAATTGCATATATCCAAAAATCAAAGGAGCAGTGGTATTTCATGAACAAGGTCCCAAGTCATTTGATTACAGCATACGCCTCAATCATACCTGGGCTTTCTCTGGTTTTCCTGATGTCAAAACCATAATGGATACAAATGGCCCTTTTGTCCGTGACTTGGAACTTGGTGTTAGTGCAATACCAACAATGCAGTACAGCTTCAGTGGGTTTTTGACTCTCCAGCAAGTTGTTGATTCATTTATAATATTCATGGCTCAGCAATTTGACATAACCCCTATCACGGAAAGTGTAGAGCATCCTCTACCACCCTCCAATGATACCGATTTGTCTTTGAAAATTCCTTGGACTCAGTTTAGTCCCGCTCACATACGAATGGCTCCCTTTCCCACTCGAGAGTACACTGATGATCAGTTCCAGTCAATTGTGAAGAATTTCATGGGGATTTTGTACTTATTGGGATTTCTGTATCCAATTTCTCGACTGATCAGTTATTCTGTGTTTGAGAAGGAACAGAAAATTAAGGAAGGGCTTTACATGATGGGCCTGAAAGATGGTGTGTTTTATCTCTCATGGTTTATAACATATGCTTTGCAGTTTGCAATCTCGTCTGGAATCATCACAGCTTGCACAATGGGGAATTTATTCAAGTATAGTGATAAGACATTGGTGTTTGCATACTTCTTCGTTTTTGGGCTTAGTGCAATTATGTTGTCATTTTTTATATCTACATTTTTCAAGCGGGCCAAAACAGCTGTAGCAGTTGGAACCCTTTCTTTCCTTGGTGCCTTTTTCCCGTATTACACAGTGTATGATGAGGGAGTCTCTATTGTCTTAAAGATTATTGCTTCTTTGCTTTCACCTACGGCTTTTGCTCTGGGGTCTATCAACTTTGCTGATTATGAGCGTGCTCATGTTGGACTTCGCTGGAGCAACATATGGCGGGATTCTTCTGGAGTGAATTTTTTGTTTTGTTTTTTGATGATGCTGCTTGATACACTGCTGTATTGTGCGATTGGTCTTTATCTTGATAAGGTTCTTCCAAGGGAGTATGGATCACAATATTCGTGGAACTTTATTTTCCAAAAGGGATTTTGGAGGAAGAAACAAGCTGTAAAACATTGTTTCTCCAATTCAGACATAGAAATTGCTGATAAGATTTCCAAGTCAAAGGAAAATTTTCTAGTAGAAAACGCTATCAAACCTGCTATAGAAGCAATAAGTTTGGACATGAAACAACAAGAGCTTGATGGCCGGTGCATTAAAATTAGGGATTTGCATAAAGTGTATGCTTCTAAAAGGGGGGCTTGCTGTGCTGTTAACTCATTACGGCTTACATTGTATGAAAATCAAATTCTCGCTCTTCTAGGGCACAATGGAGCTGGAAAAAGCACGACAATCTCAATGCTTGTTGGTCTTCTTCCTCCTACTTCAGGGGATGCGTTGGTGTTTGGAAAGAATATTTCAACTGACATTGATGAGATACGGAAGGTTTTGGGGGTCTGCCCCCAAAATGACATACTTTTTCCAGAATTGACTGTGAGAGAACATCTAGAAATATTTGCGGTATTAAAGGGTGTGGAGGAAGACTGTTTGAAGGATGTTGTTGCTAATATGGTAGATGAGGTAGGTTTAGCAGATAAAATTAACACTCTAGTGGGAGCTCTTTCTGGCGGCATGAGAAGGAAACTGTCTCTTGGAATTGCATTGATAGGGAACAGCAAGGTTATAGTTCTTGATGAGCCAACTAGTGGAATGGATCCATACTCAATGCGCTTGACTTGGCAGTTAATTAAAAAAATAAAAAAGGGGAGGATAATATTACTGACAACGCACTCTATGGATGAAGCAGATGAACTAGGCGATCGGATAGCTATCATGGCCAATGGTTCTTTGAAATGCTGTGGAAGTTCCCTTTTCTTGAAGCACCACTACGGTGTTGGTTACACTTTAACTCTTGTGAAGTCTGCAACCACTGCTTCAGTAGCTTCTGATATTGTCAAACGCCATGTTCCGTCAGCTAGTTGTGTGAGTGAGGTAGGAACTGAGATTTCCTTCAGGCTTCCTCTTCTGTCCTCATCAGCCTTTGAGAGCATGTTCAGGGAAATTGAAAGTTGCTTGAGAACATCAGTTTCTAACTTGGAATCCACTGATCATGATGGAAAAGAAAGTCTTGGTATTGAAAGCTATGGAATATCTGTCACAACCCTGGAGGAGGTATTTCTGCGAGTTGCAGGATCAGACTATGATGAAGTTGAATGTTTTGAGGAGAAAAAGTGCGCTTCTGTATCAGATTCTTTGCCTTCTCATGCTTCTTATGATCATCCATCCAAAACTACAGGAACTTACAGGAAGATTATTGGATTCATATCTAGCACAGTGGCAAGAGCTTGTTATTTATTCTTGGCTATAGTGTCAAGTCTCATAAGCTTCTTGAGTATGCTGTGCTGTAGTTGTTGTGTTATTTCCAGGTCCACGTTTTGGCAGCATTCTAAGGCCTTGTTCATTAAGAGAGCAATATCTGCTCGCAGGGATCACAAAACTATTGTTTTCCAGCTTCTGATTCCTGCTGTCTTCTTATTTATTGGCCTTCTTTTTCTCAAGCTTAAGCCACATCCTGAGCAGCAGTCCTTGACCCTTACAACATCTTATTTTAATCCTTTGCTGAGTGGAGGCGGTGGGGGAGGTCCAATTCCTTTTAATTTTTCTTTTCCAGTTGCTGAAGAGGTAGCCAATTATGTCAAAGGAGGGTGGATTCAAAGGGTCAAACCAACTGTATACAAATTCCCTAATCCAGAAAAGGCATTACGTGAAGCAGTGGAAGTAGCAGGGCCAAACCTTGGACCTGCTTTACTTTCGATGAGTGAATATTTGATGTCTAGCTTTAATGAATCCTACCAGTCTAGGTATGGAGCAGTTGTAATGGATGAGCAGTACAATGATGGAAGTTTAGGCTACACTGTTCTACACAACTGCTCTTGTCAACATTCTGGTCCAACCTTTATCAATTTGATGAATGCCGCAATTCTTAGGCTTGCTACTCGTGACATGAATATGACAATTCAGACACGTAACCACCCTTTACCAATGACACAAAGCCAGCTTTTACAACGCCATGATCTGGACGCTTTTTCTGCTGCAATAATTGTCAATATTGCCTTCTCTTTTATACCTGCCTCATTTGCTGTTTCCATTGTAAAGGAGCGGGAAGTTAAGGCTAAGCACCAACAACTAATCAGTGGGGTTTCTATTTTTTCATATTGGGCTTCTACATTTATATGGGACTTTGTGAGCTTCTTGTTTCCTACCTCCTTTGCAGTTGTTCTCTTTTACTTATTTGGTCTGGATCAGTTTGTTGGAGGGCCTTCTTTGCTGCCAACAGTCCTCATGTTTTTAGAGTATGGACTGGCAATTGCATCATCAACATACTGCCTTACATTTTTCTTTTCTGACCATACCATGGCTCAGAACGTGGTTCTCCTGGTCCACTTCTTCACTGGTCTGGTACTGATGGTTATTTCGTTTGTTATGGGACTGATACCATCAACAACAAGTGCCAATTCTTTTCTTAAGAACTTCTTCAGAATATCTCCTGGATTTTGTTTTGCTGATGGGTTTGCTTCTCTAGCTCTTCTACGGCAAGGGATGAAAGATAAAGCAAGTGATGGGGTGTTTGATTGGAATGTTACCGGTGCTTCTATCTGTTATCTTGCAGTAGAGAGCATTTGTTACTTTGTGTTAACACTTGGAATTGAAGGTTTTCCTTCTCTCAAATGGACTCTATTCGTGATCAAAAGGTGGTGGGAAAATAATCCCACGTCATACTCCTCCTTATCTGGAAAATCTATTAGAACCTTCCCTGGAACTGTTGGTATGGACTTTGATGAAGATGTAGATGTGAAAACAGAAAGAAACAGAGTACTTTCAGGTTCCCTTGACAATGGCATCATCTATTTGCGTAATCTTCGCAAGGTATATTATGAAGGGAAGCTTCACCAGCAAAAGGTTGCAGTAGATTCATTAACTTTCGCAGTTCAGGAAGGAGAATGCTTTGGTTTTTTAGGGACAAATGGAGCTGGGAAGACTACAACTTTGTCTATGTTGTGTGGAGAAGAATCTCCATCTGATGGGACTGCTTTTATTTTTGGCAAGGATATATGTTCTCATCCCAAGGCTGCTCGCCAGCATATTGGTTATTGCCCACAATTCGATGCTCTATTGGAATATTTGACCGTACAGGAGCATCTTGAGCTTTATGCTAGAATAAAAGGTGTTCCAAGTTGCATAATAGATAATGTTGTTTTGGAAAAGCTAGAGGAGTTTGACTTGCTGAAGCATGCTAATAAGCCATCATTTTCTCTTAGTGGAGGAAATAAAAGGAAATTGTCTGTCGCAATTGCGATGATTGGAAATCCTCCTATAGTCATTCTTGATGAGCCATCCACAGGTATGGATCCCATCGCCAAACGTTTCATGTGGGATGTAATATCTAGGATTTCAACAAGACGAGGAAAGACAGCAGTAATTCTAACGACCCACAGCATGAATGAAGCTCAAGCATTGTGTACACGAATAGGAATAATGGTTGGTGGTCGATTAAGGTGCGTCGGAAGTCCACAGCACTTGAAAACAAGATTTGGGAATCATCTGGAATTAGAGGTGAAACCGACTGAAGTGAGCTCTGAGGATTTAGAATTACTCTGTAAAGCTATACAAGAAAGACTCTTTGATGTTCCATCTCATCCTAGAAGCCTGCTTGACGGCCTTGAAATTTGCATTGGAGGTGCTGACTCCATTTCATCAGATGCCTCTTTTGCAGAAATTAGCTTGTCACGGGAAATGATTGTCTTCGTTGGACGCTGGCTTGGCAATGAAGAAAGAATAAAGATGCTTATCTCTTACACACCTGTATCTGATGGGGCTTCTAGCGAACTGTTATCTGAACAACTGTTCCGAGATGGTGGCATTCCATTGCCGGTATTTTGTGAGTGGTGGCTGTCCAGAGAAAAGTTCTCGGCAATAGATTCATTTATTCTATCTTCTTTTGCTGGGGCAAGATGTCAAGGGTGCAATGGTTTGAGTATGAGATACCAGTTACCATATGGTGAAGGTTTCTCTCTGGCGGATGTTTTTGGACTTCTTGAAGGAAACAGAAATAGACTGGGCATTGCAGAGTACAGCATCAGCCAGTCAACTCTGGAGACCATATTTAACCATTTTGCAGCTAACTCATGA 5652 0.4114 MGTARRQLKVMLWKNWLLKIRHPFATSAEVLLPTLVMLLLIAVRTRVDTQIHPAQPHIREEMYVEVGRGISPSFQQVLEVLLAKGEYIAFAPNTTKTEQMIDIMSIKFPLLKLVSKIYKDEAELETYIRSDVYGSCNQARNCIYPKIKGAVVFHEQGPKSFDYSIRLNHTWAFSGFPDVKTIMDTNGPFVRDLELGVSAIPTMQYSFSGFLTLQQVVDSFIIFMAQQFDITPITESVEHPLPPSNDTDLSLKIPWTQFSPAHIRMAPFPTREYTDDQFQSIVKNFMGILYLLGFLYPISRLISYSVFEKEQKIKEGLYMMGLKDGVFYLSWFITYALQFAISSGIITACTMGNLFKYSDKTLVFAYFFVFGLSAIMLSFFISTFFKRAKTAVAVGTLSFLGAFFPYYTVYDEGVSIVLKIIASLLSPTAFALGSINFADYERAHVGLRWSNIWRDSSGVNFLFCFLMMLLDTLLYCAIGLYLDKVLPREYGSQYSWNFIFQKGFWRKKQAVKHCFSNSDIEIADKISKSKENFLVENAIKPAIEAISLDMKQQELDGRCIKIRDLHKVYASKRGACCAVNSLRLTLYENQILALLGHNGAGKSTTISMLVGLLPPTSGDALVFGKNISTDIDEIRKVLGVCPQNDILFPELTVREHLEIFAVLKGVEEDCLKDVVANMVDEVGLADKINTLVGALSGGMRRKLSLGIALIGNSKVIVLDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHHYGVGYTLTLVKSATTASVASDIVKRHVPSASCVSEVGTEISFRLPLLSSSAFESMFREIESCLRTSVSNLESTDHDGKESLGIESYGISVTTLEEVFLRVAGSDYDEVECFEEKKCASVSDSLPSHASYDHPSKTTGTYRKIIGFISSTVARACYLFLAIVSSLISFLSMLCCSCCVISRSTFWQHSKALFIKRAISARRDHKTIVFQLLIPAVFLFIGLLFLKLKPHPEQQSLTLTTSYFNPLLSGGGGGGPIPFNFSFPVAEEVANYVKGGWIQRVKPTVYKFPNPEKALREAVEVAGPNLGPALLSMSEYLMSSFNESYQSRYGAVVMDEQYNDGSLGYTVLHNCSCQHSGPTFINLMNAAILRLATRDMNMTIQTRNHPLPMTQSQLLQRHDLDAFSAAIIVNIAFSFIPASFAVSIVKEREVKAKHQQLISGVSIFSYWASTFIWDFVSFLFPTSFAVVLFYLFGLDQFVGGPSLLPTVLMFLEYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLVLMVISFVMGLIPSTTSANSFLKNFFRISPGFCFADGFASLALLRQGMKDKASDGVFDWNVTGASICYLAVESICYFVLTLGIEGFPSLKWTLFVIKRWWENIXPTSYSSLSGKSIRTFPGTVGMDFDEDVDVKTERNRVLSGSLDNGIIYLRNLRKVYYEGKLHQQKVAVDSLTFAVQEGECFGFLGTNGAGKTTTLSMLCGEESPSDGTAFIFGKDICSHPKAARQHIGYCPQFDALLEYLTVQEHLELYARIKGVPSCIIDNVVLEKLEEFDLLKHANKPSFSLSGGNKRKLSVAIAMIGNPPIVILDEPSTGMDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCVGSPQHLKTRFGNHLELEVKPTEVSSEDLELLCKAIQERLFDVPSHPRSLLDGLEICIGGADSISSDASFAEISLSREMIVFVGRWLGNEERIKMLISYTPVSDGASSELLSEQLFRDGGIPLPVFCEWWLSREKFSAIDSFILSSFAGARCQGCNGLSMRYQLPYGEGFSLADVFGLLEGNRNRLGIAEYSISQSTLETIFNHFAANS 1884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4836g00006 1884 Gene3D - 1447 1698 IPR027417 -
Pral4836g00006 1884 Gene3D - 547 800 IPR027417 -
Pral4836g00006 1884 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1093 1394 IPR026082 GO:0016020|GO:0055085|GO:0140359
Pral4836g00006 1884 FunFam ABC transporter A family member 1 1446 1700 - -
Pral4836g00006 1884 Pfam ABC transporter 580 723 IPR003439 GO:0005524
Pral4836g00006 1884 ProSitePatterns ABC transporters family signature. 1594 1608 IPR017871 GO:0005524|GO:0016887
Pral4836g00006 1884 SMART AAA_5 588 770 IPR003593 GO:0016887
Pral4836g00006 1884 SMART AAA_5 1487 1674 IPR003593 GO:0016887
Pral4836g00006 1884 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1456 1686 IPR027417 -
Pral4836g00006 1884 CDD ABC_subfamily_A 560 781 - -
Pral4836g00006 1884 ProSitePatterns ABC transporters family signature. 695 709 IPR017871 GO:0005524|GO:0016887
Pral4836g00006 1884 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 560 779 IPR027417 -
Pral4836g00006 1884 CDD ABC_subfamily_A 1457 1683 - -
Pral4836g00006 1884 FunFam ATP-binding cassette sub-family A member 12 552 798 - -
Pral4836g00006 1884 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 560 793 IPR003439 GO:0005524
Pral4836g00006 1884 Pfam ABC-2 family transporter protein 986 1388 IPR013525 GO:0016020|GO:0140359
Pral4836g00006 1884 Pfam ABC-2 family transporter protein 250 480 IPR013525 GO:0016020|GO:0140359
Pral4836g00006 1884 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1457 1695 IPR003439 GO:0005524
Pral4836g00006 1884 Pfam ABC transporter 1479 1621 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4836g00006 Pral-Chr4836 41323 67154 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4836g00006 540 826 Calmodulin-binding Proteins AT2G36910 25.418 6.05e-17 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4836g00006 K05643 - gmx:100803263 3086.2