Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4833g00039 ATGGCTTCCTCTAACAGACACTGGCCTAGCATGTTCAAGTCCAAGCCTTGCAATCCCCACCATCCATGGCAGCAGCACGACATGAACTCCTCCTCTCTCATCTCTTCATCCTCCTGCCACCGAACCCCTTACGCTCCTTCTTCTTCCTCTTCTTCAGGTTGTGAGGAGAGGAGTCCAGAGCCAAAGCCGAGGTGGAACCCAAAACCAGAACAGATTAGGATTCTGGAAGCGATCTTCAACTCAGGGATGGTGAATCCACCAAGAGATGAGATCCGAAAGATCAGAGCTCAGCTTCAAGAGTATGGTCAAGTTGGTGACGCCAATGTCTTCTACTGGTTTCAGAATCGCAAGTCCAGAAGCAAACACAAGCTTCGAAACCTCCAAAACTCTAACAAAACCACCAACAACAACAATAATAACCATATCACACACGAATCAACCTCACCACTTCCTCCTCCTCCTTCTCTCATCATTCCTCATATTTCACCTTCTAATTCTTCATCTGATAACAGGTCTTCTCCATCTTCATCCTCCAAGGAAATAATCAGTGTTGTTCCTCCTTTCAAGTCATCATTCTCCATTGGCTTCTCTTCTGATATGATCCTCCCAAGTTCTTCTCCCACTTCCGCTGGTCCTGTGACCAATAATAACCACCACCCGATCTCATATTTTCAGACCCATAATAGTAATACTGAGACGTCTCTTTCTGAGCCTTTCTTCTTCCCTGCTTCTTCAAATTCTTCTGCTGCTACATCAACTCATCAAGGGTTTTGCTTCTCTGAGCTGTCTGGTCTTGTTCAAAATCAAAACGTTGGGCCTTGCACTAGTCTCTTGCTCAGTGAGATGACGAATCAGAAGAAAGAACAAGATCATCATAAGTCTTCGTCTTCTGTCACTTCCACCATTCACAGTACTGTTGTGCCTTCTATGGCTTCTGCAACCACCACTACTGTTACTGTTCCATCCCTCATCCCTCAAATTCACGGTGCAGGGGAGCTGGCAGGTGGTACGGCTGCGAAATCTATTGTATACATAAACGACGTCGCATTCGAGGTGGCTATTGGTCCCTTCAACGTACGAGCGGCTTTTGGTGAAGACGCGGTTCTGATCCACGCGGCAACAGGACACCCTGTCCCAACCAATGAGTGGGGCGTCACGCTCCAGTCACTCCAGCACGGCGCATTTTATTATCTGATATAG 1200 0.4708 MASSNRHWPSMFKSKPCNPHHPWQQHDMNSSSLISSSSCHRTPYAPSSSSSSGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRNLQNSNKTTNNNNNNHITHESTSPLPPPPSLIIPHISPSNSSSDNRSSPSSSSKEIISVVPPFKSSFSIGFSSDMILPSSSPTSAGPVTNNNHHPISYFQTHNSNTETSLSEPFFFPASSNSSAATSTHQGFCFSELSGLVQNQNVGPCTSLLLSEMTNQKKEQDHHKSSSSVTSTIHSTVVPSMASATTTTVTVPSLIPQIHGAGELAGGTAAKSIVYINDVAFEVAIGPFNVRAAFGEDAVLIHAATGHPVPTNEWGVTLQSLQHGAFYYLI 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4833g00039 399 MobiDBLite consensus disorder prediction 1 69 - -
Pral4833g00039 399 CDD homeodomain 61 123 IPR001356 GO:0003677
Pral4833g00039 399 Pfam Homeodomain 62 122 IPR001356 GO:0003677
Pral4833g00039 399 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 399 IPR044557 GO:0003700|GO:0050793
Pral4833g00039 399 MobiDBLite consensus disorder prediction 121 179 - -
Pral4833g00039 399 ProSiteProfiles 'Homeobox' domain profile. 58 123 IPR001356 GO:0003677
Pral4833g00039 399 MobiDBLite consensus disorder prediction 160 179 - -
Pral4833g00039 399 SUPERFAMILY Homeodomain-like 58 125 IPR009057 -
Pral4833g00039 399 FunFam WUSCHEL-related homeobox 11 62 129 - -
Pral4833g00039 399 Gene3D - 36 122 - -
Pral4833g00039 399 SMART HOX_1 60 127 IPR001356 GO:0003677
Pral4833g00039 399 MobiDBLite consensus disorder prediction 127 146 - -
Pral4833g00039 399 MobiDBLite consensus disorder prediction 204 228 - -
Pral4833g00039 399 MobiDBLite consensus disorder prediction 23 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4833g00039 Pral-Chr4833 401140 403730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4833g00039 1 399 Wox Gene Family AT5G45980 36.386 6.24e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pral4833g00039 Homeodomain 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4833g00039 - - pcin:129284997 468.388