Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4833g00022 ATGGCTCCTGCATTTGATTCAGTTCGTGCTATTAACCCATGCAGACAAAATTGGAAAATCAAAGTTCGTGTGGTTCGATTATGGACTATGCCCGGATGCTACTCTCATGAAGAGATATCATCCCTGGAAATGATTCTCAGGGATGAGGATGGTGACAACATCCATGCTACAGTTAAGACTGCCTTCCTTCGACGACATCGCAAGAATTTTGAAGAGGGAAAAATATATTTGGTGTCGTATTTTTATGTGTCTCCCAATACAGGCTCATACCGAACCACTGATCATCCCTACCGAGCAAACTTTATTTTTTCCACTTCTGTTCGACCATATGCGGATGATGGCAAAATAAACAACTTTGGTTTCGCATTCCGTTCATTCTCTGAAATATTATCCAATCAGTTTGATGATCGATATCTAATTGATGTCATCGGGTTACTAACTGGAGTGGGAGAAAAAGAAGAATGCAATGTCAACGGACGCACACAGTTTAGGCTTGATGTAGAGTTAATGGATGAAGGGAAGGAAAAACTGGAGTGTACATTGTCAGGAGATTTTACTAATGAAGTTCTGCAGCATGTGTCTCGTGTCCATACTGGTTCTACCATCATCATCATTCAACTGTGCAAAGTTAGGGAGTTTAAAGGAAAGAGAAAAGTCTCTAATTCCATGTACTCTTCCCGTCTCCTGATTCATCCTACAATACAAGAAGTTCAGGAGTTTGTGCAGAAATTGAAAGGTGCTGGGATTCAGTTGGGCCAAATACCTGCTCGAATTGCTCCACAAATTGTAGTATCTGTGGCCGACGATCTATTGGCTTTGGATGACCGAAGAAAAATAGTGGATTTACGATCTGGACCAGCAGAATGTATAGTGGTTACTATGGCAAATATTGTAGATGTGAGATCTGATCGTGGATGGATGTACACATCATGCAAACAGTGTAGCAAGAAAGTGGTTCCAGATGGAGAAGGTTTCTTTTGCGAAAAGTGCCAAGCTATAGTAAAAGCTGTTATTCCCAGGTTCATGGTGGACTGTGAGATACTGGATGACACTGGATCATGTCATGTTGTGATTTTTGACCGAGAATTATCCAAACTGCTTGGGTGTTCAGCAGCAGAGTTGAAGGCACGTCAGACTAATCAGATATCTTGGAAGAGGTATTTGTTCAAGATACGTATTCCAGGAGATTATGTCAATGGGAATTCCAATGTGTGTGTAGCTACTCGGTTGACAAATGATAAAGCCATAATGCAGTCTTTCTTGAACACATCTTATGAAGACATTGCATCAGAGGGTTGTACTTCCGTTGGTCTCACAGAAGAAAAGAACACTGAGCAGTGCCTGATAGAATCATCTGACGGTGCAAGTTCTTCTGCTAATCAAACCGTGCATGCAAATTTCTCTGAATTATCAAAATTTGACTCAACCTCTACACACCAAGTGGCAAATACAATAGACCCAGGTTTCGAAGCAATGAAGTCCATAGTAGAATCTAAAGTTGCAATTGTAAACACTGCCAATGTTGAGAAGGCAAACCCCTTTGGTGATCTCCCATCAACTGATTGTCAGGTTGAAGTAGAGAGTAGCAAGCACAATGCTGGTTTCATGGAAATCCCTTCTACTACATCTGGACATAATGGTGCGAAGAACGGTACTGAAAATATGTTAAATCATCCACTTGGTGGAAATCTTGAAGCTAATGAGAATAATACATCATTTGCAAGACGCCGCAGAGCAAAACGCAAACAAATCCAGGAAGAATAG 1764 0.4104 MAPAFDSVRAINPCRQNWKIKVRVVRLWTMPGCYSHEEISSLEMILRDEDGDNIHATVKTAFLRRHRKNFEEGKIYLVSYFYVSPNTGSYRTTDHPYRANFIFSTSVRPYADDGKINNFGFAFRSFSEILSNQFDDRYLIDVIGLLTGVGEKEECNVNGRTQFRLDVELMDEGKEKLECTLSGDFTNEVLQHVSRVHTGSTIIIIQLCKVREFKGKRKVSNSMYSSRLLIHPTIQEVQEFVQKLKGAGIQLGQIPARIAPQIVVSVADDLLALDDRRKIVDLRSGPAECIVVTMANIVDVRSDRGWMYTSCKQCSKKVVPDGEGFFCEKCQAIVKAVIPRFMVDCEILDDTGSCHVVIFDRELSKLLGCSAAELKARQTNQISWKRYLFKIRIPGDYVNGNSNVCVATRLTNDKAIMQSFLNTSYEDIASEGCTSVGLTEEKNTEQCLIESSDGASSSANQTVHANFSELSKFDSTSTHQVANTIDPGFEAMKSIVESKVAIVNTANVEKANPFGDLPSTDCQVEVESSKHNAGFMEIPSTTSGHNGAKNGTENMLNHPLGGNLEANENNTSFARRRRAKRKQIQEE 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4833g00022 587 CDD RPA1_DBD_C 291 404 IPR047192 -
Pral4833g00022 587 Pfam Replication factor-A C terminal domain 294 381 IPR013955 -
Pral4833g00022 587 Gene3D - 115 250 IPR012340 -
Pral4833g00022 587 PANTHER OS03G0429900 PROTEIN 8 431 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pral4833g00022 587 CDD RPA1_DBD_A_like 19 107 - -
Pral4833g00022 587 MobiDBLite consensus disorder prediction 560 587 - -
Pral4833g00022 587 CDD RPA1_DBD_B_like 141 245 - -
Pral4833g00022 587 Gene3D - 273 420 IPR012340 -
Pral4833g00022 587 SUPERFAMILY Nucleic acid-binding proteins 288 404 IPR012340 -
Pral4833g00022 587 Pfam Domain of unknown function DUF223 43 138 IPR003871 -
Pral4833g00022 587 Gene3D - 5 109 IPR012340 -
Pral4833g00022 587 SUPERFAMILY Nucleic acid-binding proteins 4 114 IPR012340 -
Pral4833g00022 587 SUPERFAMILY Nucleic acid-binding proteins 121 248 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4833g00022 Pral-Chr4833 167659 170309 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4833g00022 10 393 Core DNA Replication Machinery Family AT5G08020 24.337 1.52e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4833g00022 - - pcin:129299041 360.918