Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4832g00028 ATGCTATGCAACTATGTCCTTTGTTACTGGTGGATTATGAAACCACTATTCTGGATCTTCCATTTGCTTACAAAGTTCCCATTGTTGGAGACTTCAATATGTGTTGTGGAAAGCTTTATTCTTCTGCTGAATATCACATTTGGCATATCTATCAATGTCATAAGAATAAAGATATTGTCTTCCAAAACCAGTTCACTTGAAGATCCACTTCTTTCCAACCATATGGACCTTGAGGAAGGTTGCCATCGTGATCTTGGAAAATCTAGGAACTTCTGTGATTTGATGACTTTCAAATTCATAAATCCTGTAATGAACCATGGTGTGGTTAAACAACTGGACTTTGAAGATCTGCTGGAACTACCTCCAGATTTGGATCCTTCTTCCTGTCATGATATACTTTTCACCTGCTGGGAAGCACAACTGAGCAATAATGGTTCAAACCCATCTTTACTTAGAGCAGTATGCTGTGCATATGGATGGCCATATCTCCGCCTAGGTTTATTGAAGGTGGTTAATGATTGTATTGGTTTTGCGGGACCATTGCTTCTCAATAAGCTGATCCGGTTTCTTCAACAAGGTTCGGAGAGTTTGGATGGATATTTACTTGCTATATCCTTGGGCCTCACATCTGTAATTAAATCCTTCTTAGATACACAATATAGTTTTCATCTTGGCAAGCTGAAGCTAAGGCTACGATCTAGCATCATGACTCTAATCTATCAAAAGTGTCTGTGTGTGAACTTAGCGGAGCGTTCAAAATTCTCTAATGGAGAGATTCAGACATTTATGTCTGTGGATGCTGACCGAACTGTCAACATGTGTAATAGTTTCCATGATGTGTGGAGCTTGCCTTTACAAATTGGAGTGGCGCTATATCTTTTGTATACTCAAGTCAAATTTGCATTTGTATCTGGATTAGCAATTACCATTTTGTTGATACCAGTCAATAAATGGATTTCAAAATTGATTGCAAGTGCAACTGAGAAAATGATGAAGCAGAAGGATGAAAGGATACGGAGGACAGGGGAACTTTTGACTTATATTCGCACTTTGAAGATGAATGCATGGGAACTTCTTTTTTCTGGTTGGCTGATGGAGACAAGATCTTCTGAAGTGAAACACTTGGCTACCCGGAAGTACCTGGATGCATGGTGTGTATTCTTTTGGGCCACAACGCCAACTCTCTTTTCTCTTTTCACATTTGGACTCTATGCATTGCTGGGGCACCAACTTGATGCTGCAATGGTGTTCACTTGTCTGGCATTGTTTAACACATTAATTTCACCACTGAATTCATTCCCTTGGGTGATTAATGGATTGATTGATGCAATTGTATCCTCCAGACGGTTGAGCAGGTTTCTTTCTTGTCCTCAAAATAAATCTAAGGTGAAAGAGACCAATTCATGTTCCTTGCCATACCATAGTGAACAGCCTGACTCTTCGCAAGGTTTGGCAGTCTTCGTCCAAGATGCTTGTTGTACTTGGTCAAGCAGTGATGAAGAGACATTAAATTTGGTGTTGAACCATGTCAATCTAAGCCTGTCAAGGGGTTCCTTTGTTGCAGTGGTAGGAGAGGTTGGTTCAGGTAAATCATCATTGCTATATTCGATTCTTGGAGAAACACGGGCAGTTCATGGATCAATTCACTCCGATGGATCAGTAGCATATGTACCCCAGGTCCCATGGATTTTATCTGGAACAATACGTGACAACATAATATTTGGGAAAAATTATGATCCCAAAAGGTATGCAGAAACTGTTCAAGCATGTGCTCTAGCTGTTGATATCTCATTGATGGTTGGAGGTGACATGACTTACATTGGGGAAAAGGGAGTCAACTTATCTGGTGGACAGAGAACACGTCTTGCTTTAGCCAGGGCATTGTATCATGGCTCTGATGTGATTATGCTTGATGATGTCCTGAGTACAGTTGATGCACAAGTTGCTCAATGGATCTTACACAATGCCATTCTAGGTCCACTTGTGCAGGGAAAAACTCGATTGCTCTGTACCCATAATATACAGGCCATATCCTCTGCTGAGATGGTTGTTATAATGGACAAAGGACGCATAAAGTGGGTGGGAAGTCCTAATGACCACCAAGTCTACTCATATATAACATTCTCCCCGTTGAATGAACTTGATACGGCTGTACAGAATCAAGGAAAATCTTGCTGCACAAATTCTTCCACATTAAAAGATCTCCCAGATAGTGAAATTAAACATGTTGCGGAGGGAGCAGAGGAGATCATTGAAGCTGAGTCAAGGAAAGAGGGAAAAGTGGAACCTGGAGTGTATAAAAACTACGCTATGTACACTGGCTGGTTCATTACAGTTGTAATATGCCTGTCAGCTGTTCTAATGCAAGCTTCTCGTAATGGAAATGATTTATGGCTGTCATTTTGGGTTGATACGACACACAGCAGTCAAACAAGATACTCTCTGCCCTTTTATCTGGCTATACTGGGTCTCTTTTGCATCATAAATTCTTTTTTCACATTGGTGAGGGCGTTCTCTTTTGCATTTGGTGGCTTACAAGCAGCAATTAAAGTGCACAACAAAATGCTTGGTAATCTTATCAATGCACCTGTGCAATTCTTTGATCAGACCCCAGGTGGAAGAATACTCAACAGGTTTTCCTCGGATCTTTATACAATTGATGACTCCCTTCCATTCATTATGAACATTCTCCTGGCTAATTTTGTTGGCCTCTTGGGCATTGCAGTAGTTTTGTCATATGTTCAGGTCTTTTTCTTAATCCTGCTATTGCCGTTTTGGTTTATCTACAGTAGACTCCAGTTCTTCTACAGGTCAACATCAAGGGAACTACGACGACTTGACAGTGTTTCTCGTTCTCCAATTTATACATCTTTCACGGAAACTCTTGATGGATCATCAACTATTAGAGCATTTAAACTTGAGGACTTATTTTTTTCCAAGTTCACTGAACACGTAACATTGTATCAGAAGACTTCTTTCACAGAGATAGCAGCCAGTTTATGGCTTTCCTTACGTCTTCAATTATTAGCTGCATCTATCATCTCATTTATTGCACTGATGGCTGTGGTTGGAGGTCATGGCAGTCTGCCAATCAGCTTTGGCACCCCTGGGCTGGTAGGTTTGGCACTCTCATATGCGGCTCCAATAGTGTCCTTGCTGGGAAGCTTTTTAACAAGTTTCACTGAAACAGAAAAGGAAATGGTTTCAGTTGAAAGAGTCCTTGAATATATGGACATTCCTCAGGAGGAAATTGCTGGACGCCTATTCATGAATCCAGATTGGCCAAATCAAGGCGTAATTGAGTTCCAAAATGTAACTTTAAAATACAAGCCATCTTTGCCACCTGCACTCTGCAATCTTAGTTTCACAATTGCTGGAGGGTCCCAGATTGGAATTATTGGAAGAACAGGTGCTGGAAAGTCTAGTGTGTTGAATGCCCTTTTCCGCCTTACCCCAATATGTACAGGATCTATATTCATTGATGGCATAAACATTAGCAACATTCCTGTCAGAGAACTACGTTCTCGTTTGGCTGTTGTTCCTCAGAGTCCATTCCTATTCGAAGGATCATTAAGGGATAATCTGGACCCCTTCCAAGTGCACGATGACTTGATAATTTGGAATGCTCTGGAGAAGTGCCATGTGAAAGAGGAAGTAGAAGCAGCTGGAGGGCTACATATTCTCGTAAAGGAATCTGGGATGTCATTTTCAGTTGGCCAAAGGCAGCTTCTTTGCCTTGCACGTGCTCTTCTCAAATCTTCAAAGGTTCTATGTTTGGATGAATGTACAGCCAATGTGGACACACAAACTGCTTCGCTGCTGCAAAGTACTATAGCTGAAGAATGCAAGGGCATAACAGTGATTACAATAGCTCACCGGATATCGACAGTTTTGAATATGGACAACATTTTAATTCTTGACCATGGGAACCTGGCTGAACAAGGAAACCCCCAGGTTCTACTGAAACATGAATCCTTATTCTCCAGCTTTGCAAAAGCTTCATCAATGTGA 4011 0.4109 MLCNYVLCYWWIMKPLFWIFHLLTKFPLLETSICVVESFILLLNITFGISINVIRIKILSSKTSSLEDPLLSNHMDLEEGCHRDLGKSRNFCDLMTFKFINPVMNHGVVKQLDFEDLLELPPDLDPSSCHDILFTCWEAQLSNNGSNPSLLRAVCCAYGWPYLRLGLLKVVNDCIGFAGPLLLNKLIRFLQQGSESLDGYLLAISLGLTSVIKSFLDTQYSFHLGKLKLRLRSSIMTLIYQKCLCVNLAERSKFSNGEIQTFMSVDADRTVNMCNSFHDVWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWISKLIASATEKMMKQKDERIRRTGELLTYIRTLKMNAWELLFSGWLMETRSSEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLYALLGHQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIVSSRRLSRFLSCPQNKSKVKETNSCSLPYHSEQPDSSQGLAVFVQDACCTWSSSDEETLNLVLNHVNLSLSRGSFVAVVGEVGSGKSSLLYSILGETRAVHGSIHSDGSVAYVPQVPWILSGTIRDNIIFGKNYDPKRYAETVQACALAVDISLMVGGDMTYIGEKGVNLSGGQRTRLALARALYHGSDVIMLDDVLSTVDAQVAQWILHNAILGPLVQGKTRLLCTHNIQAISSAEMVVIMDKGRIKWVGSPNDHQVYSYITFSPLNELDTAVQNQGKSCCTNSSTLKDLPDSEIKHVAEGAEEIIEAESRKEGKVEPGVYKNYAMYTGWFITVVICLSAVLMQASRNGNDLWLSFWVDTTHSSQTRYSLPFYLAILGLFCIINSFFTLVRAFSFAFGGLQAAIKVHNKMLGNLINAPVQFFDQTPGGRILNRFSSDLYTIDDSLPFIMNILLANFVGLLGIAVVLSYVQVFFLILLLPFWFIYSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKLEDLFFSKFTEHVTLYQKTSFTEIAASLWLSLRLQLLAASIISFIALMAVVGGHGSLPISFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERVLEYMDIPQEEIAGRLFMNPDWPNQGVIEFQNVTLKYKPSLPPALCNLSFTIAGGSQIGIIGRTGAGKSSVLNALFRLTPICTGSIFIDGINISNIPVRELRSRLAVVPQSPFLFEGSLRDNLDPFQVHDDLIIWNALEKCHVKEEVEAAGGLHILVKESGMSFSVGQRQLLCLARALLKSSKVLCLDECTANVDTQTASLLQSTIAEECKGITVITIAHRISTVLNMDNILILDHGNLAEQGNPQVLLKHESLFSSFAKASSM 1336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4832g00028 1336 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 167 442 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4832g00028 1336 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1100 1333 IPR003439 GO:0005524
Pral4832g00028 1336 FunFam ABC transporter C family member 5 743 1083 - -
Pral4832g00028 1336 FunFam ATP-binding cassette (ABC) transporter, putative 1088 1333 - -
Pral4832g00028 1336 Pfam ABC transporter 1118 1264 IPR003439 GO:0005524
Pral4832g00028 1336 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 779 1065 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4832g00028 1336 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 88 1333 - -
Pral4832g00028 1336 CDD ABC_6TM_MRP7_D2_like 778 1077 - -
Pral4832g00028 1336 ProSitePatterns ABC transporters family signature. 614 628 IPR017871 GO:0005524|GO:0016887
Pral4832g00028 1336 Pfam ABC transporter transmembrane region 166 430 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4832g00028 1336 Pfam ABC transporter transmembrane region 780 1023 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4832g00028 1336 SMART AAA_5 516 690 IPR003593 GO:0016887
Pral4832g00028 1336 SMART AAA_5 1126 1310 IPR003593 GO:0016887
Pral4832g00028 1336 CDD ABCC_MRP_domain2 1098 1317 - -
Pral4832g00028 1336 Gene3D - 459 712 IPR027417 -
Pral4832g00028 1336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 502 699 IPR027417 -
Pral4832g00028 1336 Gene3D ABC transporter type 1, transmembrane domain 153 458 IPR036640 GO:0005524|GO:0016020
Pral4832g00028 1336 ProSitePatterns ABC transporters family signature. 1236 1250 IPR017871 GO:0005524|GO:0016887
Pral4832g00028 1336 SUPERFAMILY ABC transporter transmembrane region 157 457 IPR036640 GO:0005524|GO:0016020
Pral4832g00028 1336 Gene3D - 1086 1331 IPR027417 -
Pral4832g00028 1336 FunFam ATP-binding cassette subfamily C member 10 142 459 - -
Pral4832g00028 1336 CDD ABC_6TM_MRP7_D1_like 165 450 - -
Pral4832g00028 1336 Pfam ABC transporter 507 639 IPR003439 GO:0005524
Pral4832g00028 1336 FunFam ABC transporter C family member 13 467 723 - -
Pral4832g00028 1336 CDD ABCC_MRP_domain1 488 690 - -
Pral4832g00028 1336 SUPERFAMILY ABC transporter transmembrane region 775 1082 IPR036640 GO:0005524|GO:0016020
Pral4832g00028 1336 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 486 713 IPR003439 GO:0005524
Pral4832g00028 1336 Gene3D ABC transporter type 1, transmembrane domain 744 1083 IPR036640 GO:0005524|GO:0016020
Pral4832g00028 1336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1094 1331 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4832g00028 Pral-Chr4832 205666 222312 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4832g00028 506 731 Calmodulin-binding Proteins AT2G36910 28.340 3.76e-19 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4832g00028 K05674 - gmx:100814181 2121.28