Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4832g00027 ATGGACAAGTTTTTGGCGCTAATTTGCCCTAATTCTCCATCCGTATGGGATGGAAAGGGCTTCTCAGCGTGTTTCGAAGATATGGTTTTAGGTTTTGGACTGAATGCAGCGACTATTGGTATAATTGTTGTGCTTGGATGCATTCACAAGAGCAGCCGAGGAATTCAAAGATCAGACACGCAGATGGCCCTTTTGCAGAAGCTTTTCCTGCATCTTATACCAGCTGTTGGAGCATGTGCTTCGTTGTTGGACACAATTTTTCTATGGAAGAGAGAAATTAACAGGCACTTTGCTGGATATCATAAGTGGTTTTATAGCTGTTCAGAGTTGATGGTGTGGACAAATATCATTCTCTTCTCACCGTGTGTCAGCAGTCATTACATGCTATGCAACTATGTCCTTTGTTACTGGTGGATTATGAAACCACTATTCTGGATCTTCCATTTGCTTACAAAGTTCCCATTGTTGGAGACTTCAATATGTGTTGTGGAAAGCTTTATTCTTCTGCTGAATATCACATTTGGCATATCTATCAATGTCATAAGAATAAAGATATTGTCTTCCAAAACCAGTTCACTTGAAGATCCACTTCTTTCCAACCATATGGACCTTGAGGAAGGTTGCCATCGTGATCTTGGAAAATCTAGGAACTTCTGTGATTTGATGACTTTCAAATTCATAAATCCTGTAATGAACCATGGTGTGGTTAAACAACTGGACTTTGAAGATCTGCTGGAACTACCTCCAGATTTGGATCCTTCTTCCTGTCATGATATACTTTTCACCTGCTGGGAAGCACAACTGAGCAATAATGGTTCAAACCCATCTTTACTTAGAGCAGTATGCTGTGCATATGGATGGCCATATCTCCGCCTAGGTTTATTGAAGGTGGTTAATGATTGTATTGGTTTTGCGGGACCATTGCTTCTCAATAAGCTGATCCGGTTTCTTCAACAAGTCAATAAATGGATTTCAAAATTGATTGCAAGTGCAACTGAGAAAATGATGAAGCAGAAGGATGAAAGGATACGGAGGACAGGGGAACTTTTGACTTATATTCGCACTTTGAAGATGAATGCATGGGAACTTCTTTTTTCTGGTTGGCTGATGGAGACAAGATCTTCTGAAGTGAAACACTTGGCTACCCGGAAGTACCTGGATGCATGGTGTGTATTCTTTTGGGCCACAACGCCAACTCTCTTTTCTCTTTTCACATTTGGACTCTATGCATTGCTGGGGCACCAACTTGATGCTGCAATGGTGTTCACTTGTCTGGCATTGTTTAACACATTAATTTCACCACTGAATTCATTCCCTTGGGTGATTAATGGATTGATTGATGCAATTGTATCCTCCAGACGGTTGAGCAGGTTTCTTTCTTGTCCTCAAAATAAATCTAAGGTGAAAGAGACCAATTCATGTTCCTTGCCATACCATAGTGAACAGCCTGACTCTTCGCAAGGTTTGGCAGTCTTCGTCCAAGATGCTTGTTGTACTTGGTCAAGCAGTGATGAAGAGACATTAAATTTGGTGTTGAACCATGTCAATCTAAGCCTGTCAAGGGGTTCCTTTGTTGCAGTGGTAGGAGAGGTTGGTTCAGGTAAATCATCATTGCTATATTCGATTCTTGGAGAAACACGGGCAGTTCATGGATCAATTCACTCCGATGGATCAGTAGCATATGTACCCCAGGTCCCATGGATTTTATCTGGAACAATACGTGACAACATAATATTTGGGAAAAATTATGATCCCAAAAGGTATGCAGAAACTGTTCAAGCATGTGCTCTAGCTGTTGATATCTCATTGATGGTTGGAGGTGACATGACTTACATTGGGGAAAAGGGAGTCAACTTATCTGGTGGACAGAGAACACGTCTTGCTTTAGCCAGGGCATTGTATCATGGCTCTGATGTGATTATGCTTGATGATGTCCTGAGTACAGTTGATGCACAAGTTGCTCAATGGATCTTACACAATGCCATTCTAGGTCCACTTGTGCAGGGAAAAACTCGATTGCTCTGTACCCATAATATACAGGCCATATCCTCTGCTGAGATGGTTGTTATAATGGACAAAGGACGCATAAAGTGGGTGGGAAGTCCTAATGACCACCAAGTCTACTCATATATAACATTCTCCCCGTTGAATGAACTTGATACGGCTGTACAGAATCAAGGAAAATCTTGCTGCACAAATTCTTCCACATTAAAAGATCTCCCAGATAGTGAAATTAAACATGTTGCGGAGGGAGCAGAGGAGATCATTGAAGCTGAGTCAAGGAAAGAGGGAAAAGTGGAACCTGGAGTGTATAAAAACTACGCTATGTACACTGGCTGGTTCATTACAGTTGTAATATGCCTGTCAGCTGTTCTAATGCAAGCTTCTCGTAATGGAAATGATTTATGGCTGTCATTTTGGGTTGATACGACACACAGCAGTCAAACAAGATACTCTCTGCCCTTTTATCTGGCTATACTGGGTCTCTTTTGCATCATAAATTCTTTTTTCACATTGGTGAGGGCGTTCTCTTTTGCATTTGGTGGCTTACAAGCAGCAATTAAAGTGCACAACAAAATGCTTGGTAATCTTATCAATGCACCTGTGCAATTCTTTGATCAGACCCCAGGTGGAAGAATACTCAACAGGTTTTCCTCGGATCTTTATACAATTGATGACTCCCTTCCATTCATTATGAACATTCTCCTGGCTAATTTTGTTGGCCTCTTGGGCATTGCAGTAGTTTTGTCATATGTTCAGGTCTTTTTCTTAATCCTGCTATTGCCGTTTTGGTTTATCTACAGTAGACTCCAGTTCTTCTACAGGTCAACATCAAGGGAACTACGACGACTTGACAGTGTTTCTCGTTCTCCAATTTATACATCTTTCACGGAAACTCTTGATGGATCATCAACTATTAGAGCATTTAAACTTGAGGACTTATTTTTTTCCAAGTTCACTGAACACGTAACATTGTATCAGAAGACTTCTTTCACAGAGATAGCAGCCAGTTTATGGCTTTCCTTACGTCTTCAATTATTAGCTGCATCTATCATCTCATTTATTGCACTGATGGCTGTGGTTGGAGGTCATGGCAGTCTGCCAATCAGCTTTGGCACCCCTGGGCTGGTAGGTTTGGCACTCTCATATGCGGCTCCAATAGTGTCCTTGCTGGGAAGCTTTTTAACAAGTTTCACTGAAACAGAAAAGGAAATGGTTTCAGTTGAAAGAGTCCTTGAATATATGGACATTCCTCAGGAGGAAATTGCTGGACGCCTATTCATGAATCCAGATTGGCCAAATCAAGGCGTAATTGAGTTCCAAAATGTAACTTTAAAATACAAGCCATCTTTGCCACCTGCACTCTGCAATCTTAGTTTCACAATTGCTGGAGGGTCCCAGATTGGAATTATTGGAAGAACAGGTGCTGGAAAGTCTAGTGTGTTGAATGCCCTTTTCCGCCTTACCCCAATATGTACAGGATCTATATTCATTGATGGCATAAACATTAGCAACATTCCTGTCAGAGAACTACGTTCTCGTTTGGCTGTTGTTCCTCAGAGTCCATTCCTATTCGAAGGATCATTAAGGGATAATCTGGACCCCTTCCAAGTGCACGATGACTTGATAATTTGGAATGCTCTGGAGAAGTGCCATGTGAAAGAGGAAGTAGAAGCAGCTGGAGGGCTACATATTCTCGTAAAGGAATCTGGGATGTCATTTTCAGTTGGCCAAAGGCAGCTTCTTTGCCTTGCACGTGCTCTTCTCAAATCTTCAAAGGTTCTATGTTTGGATGAATGTACAGCCAATGTGGACACACAAACTGCTTCGCTGCTGCAAAGTACTATAGCTGAAGAATGCAAGGGCATAACAGTGATTACAATAGCTCACCGGATATCGACAGTTTTGAATATGGACAACATTTTAATTCTTGACCATGGGAACCTGGCTGAACAAGGAAACCCCCAGGTTCTACTGAAACATGAATCCTTATTCTCCAGCTTTGCAAAAGCTTCATCAATGTGA 4026 0.4151 MDKFLALICPNSPSVWDGKGFSACFEDMVLGFGLNAATIGIIVVLGCIHKSSRGIQRSDTQMALLQKLFLHLIPAVGACASLLDTIFLWKREINRHFAGYHKWFYSCSELMVWTNIILFSPCVSSHYMLCNYVLCYWWIMKPLFWIFHLLTKFPLLETSICVVESFILLLNITFGISINVIRIKILSSKTSSLEDPLLSNHMDLEEGCHRDLGKSRNFCDLMTFKFINPVMNHGVVKQLDFEDLLELPPDLDPSSCHDILFTCWEAQLSNNGSNPSLLRAVCCAYGWPYLRLGLLKVVNDCIGFAGPLLLNKLIRFLQQVNKWISKLIASATEKMMKQKDERIRRTGELLTYIRTLKMNAWELLFSGWLMETRSSEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLYALLGHQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIVSSRRLSRFLSCPQNKSKVKETNSCSLPYHSEQPDSSQGLAVFVQDACCTWSSSDEETLNLVLNHVNLSLSRGSFVAVVGEVGSGKSSLLYSILGETRAVHGSIHSDGSVAYVPQVPWILSGTIRDNIIFGKNYDPKRYAETVQACALAVDISLMVGGDMTYIGEKGVNLSGGQRTRLALARALYHGSDVIMLDDVLSTVDAQVAQWILHNAILGPLVQGKTRLLCTHNIQAISSAEMVVIMDKGRIKWVGSPNDHQVYSYITFSPLNELDTAVQNQGKSCCTNSSTLKDLPDSEIKHVAEGAEEIIEAESRKEGKVEPGVYKNYAMYTGWFITVVICLSAVLMQASRNGNDLWLSFWVDTTHSSQTRYSLPFYLAILGLFCIINSFFTLVRAFSFAFGGLQAAIKVHNKMLGNLINAPVQFFDQTPGGRILNRFSSDLYTIDDSLPFIMNILLANFVGLLGIAVVLSYVQVFFLILLLPFWFIYSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKLEDLFFSKFTEHVTLYQKTSFTEIAASLWLSLRLQLLAASIISFIALMAVVGGHGSLPISFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERVLEYMDIPQEEIAGRLFMNPDWPNQGVIEFQNVTLKYKPSLPPALCNLSFTIAGGSQIGIIGRTGAGKSSVLNALFRLTPICTGSIFIDGINISNIPVRELRSRLAVVPQSPFLFEGSLRDNLDPFQVHDDLIIWNALEKCHVKEEVEAAGGLHILVKESGMSFSVGQRQLLCLARALLKSSKVLCLDECTANVDTQTASLLQSTIAEECKGITVITIAHRISTVLNMDNILILDHGNLAEQGNPQVLLKHESLFSSFAKASSM 1341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4832g00027 1341 ProSitePatterns ABC transporters family signature. 1241 1255 IPR017871 GO:0005524|GO:0016887
Pral4832g00027 1341 Gene3D - 1091 1336 IPR027417 -
Pral4832g00027 1341 Gene3D - 467 717 IPR027417 -
Pral4832g00027 1341 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 784 1070 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4832g00027 1341 SUPERFAMILY ABC transporter transmembrane region 780 1087 IPR036640 GO:0005524|GO:0016020
Pral4832g00027 1341 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1105 1338 IPR003439 GO:0005524
Pral4832g00027 1341 FunFam ABC transporter C family member 13 472 728 - -
Pral4832g00027 1341 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1099 1336 IPR027417 -
Pral4832g00027 1341 CDD ABC_6TM_MRP7_D2_like 783 1082 - -
Pral4832g00027 1341 Pfam ABC transporter 512 644 IPR003439 GO:0005524
Pral4832g00027 1341 Pfam ABC transporter 1123 1269 IPR003439 GO:0005524
Pral4832g00027 1341 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 491 718 IPR003439 GO:0005524
Pral4832g00027 1341 Gene3D ABC transporter type 1, transmembrane domain 269 466 IPR036640 GO:0005524|GO:0016020
Pral4832g00027 1341 SMART AAA_5 1131 1315 IPR003593 GO:0016887
Pral4832g00027 1341 SMART AAA_5 521 695 IPR003593 GO:0016887
Pral4832g00027 1341 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 507 704 IPR027417 -
Pral4832g00027 1341 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 215 316 - -
Pral4832g00027 1341 CDD ABCC_MRP_domain2 1103 1322 - -
Pral4832g00027 1341 CDD ABCC_MRP_domain1 493 695 - -
Pral4832g00027 1341 ProSitePatterns ABC transporters family signature. 619 633 IPR017871 GO:0005524|GO:0016887
Pral4832g00027 1341 SUPERFAMILY ABC transporter transmembrane region 320 462 IPR036640 GO:0005524|GO:0016020
Pral4832g00027 1341 FunFam ATP-binding cassette (ABC) transporter, putative 1093 1338 - -
Pral4832g00027 1341 Pfam ABC transporter transmembrane region 785 1028 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4832g00027 1341 FunFam ABC transporter C family member 5 748 1088 - -
Pral4832g00027 1341 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 320 447 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4832g00027 1341 Gene3D ABC transporter type 1, transmembrane domain 749 1088 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4832g00027 Pral-Chr4832 203924 222312 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4832g00027 511 736 Calmodulin-binding Proteins AT2G36910 28.340 2.65e-19 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4832g00027 K05674 - gmx:100814181 1635.93