Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4832g00024 ATGATGGATGGTTGCAAAAAATCCTCCACACCGGGCCAGTCATACAATTCTCTCTATGTCAATCCCCTCACTGAGCTCAGGCATGGCCGTAGCTGTAGCCACGACTATGGCCGTTTAGCTAACAAAGGTGACGACTTTGAAGATTTCGCTCACCGAAGCACGAGAATCTTGACGGATAACAAAGAGAATGCGACGCCTAACAAGAAAGAAACTGTAGCTTCTTCTGGTGATGACAAGGAAAACGCAGTGCCCAAAAAGTTCTCGAATTCTAGGTCTCTGTCCACTGATAGGATCTTGAAGCCTACTTCGCTTCAGTTCTGCATGCAAATGAATGATTCTGAAAAAGCTTTTGGGTCTAAGATATGGGATCGTTTTGATTTGGAGAATTCGAGCTCTCTGAATGCTTGGGACTTTTCCGATTCTGAGGCAGCTCCAGCTTCATCGTGGTCAACTCTGCCAAATAAGTCTTTGGTCTGTAGACCATTGCCCGCTGATGTTGGAAGATGTACATGTGTTATTGTGAAGGAAGCATCGCCAGAAGGACTGTCTGGAGGCACATTGTTTTCTCTTTATACCTATGAAGGCAAAGGACGGCAGAATAGGAAACTGGCTGTGGCTTACCATAAGAGGCGAAATGGGAGGTCTCAATTCACCATAGCTCAGAATGTAAAAGGACTTTTGTCCAGTTCAGATGATAGTTTTCTTGGAACAGTGATAGCCAACTTCATGGGTTCAAAATACCACATATGGGATCAGGGATATCGTCATGATTGCTGGGGTAAACAGCCAAAACCACCTCTTGCTGTTGTGGCATTCATCCCAACTATAGCAACATGTACAGGAAGTTACAGAGGCATGAGGGCATATGTACCCAAACATCAATCTATGTCACTGAAGAACACAAGTCAGGTACAACATATCAAAGGACTGCCAACAGATTGGGAGGAAAAGCTGGACAAAGTGCATCAACTATACTCAAGAGTGCCAATTTACAACAAGATTTCAAAGCAGTTTGAACTGGACTTCAGAGATAAAGGAAGACCAGGACTTCAGATCCAGGCATCAGTTAAAAATTTCCAGCTCACTTTGGAGGAGAATGGGAAGCAAACAATTCTGCAGTTAGGCAGGGTGGCAAAATCAAAGTTTGTTTTGGATTACAGATATCCCTTGACAGGTTACCAAGCATTCTGCATATGCTTAGCTTCCATTGATACAAAGCTTTGCTGCTCAGTGTAG 1236 0.4385 MMDGCKKSSTPGQSYNSLYVNPLTELRHGRSCSHDYGRLANKGDDFEDFAHRSTRILTDNKENATPNKKETVASSGDDKENAVPKKFSNSRSLSTDRILKPTSLQFCMQMNDSEKAFGSKIWDRFDLENSSSLNAWDFSDSEAAPASSWSTLPNKSLVCRPLPADVGRCTCVIVKEASPEGLSGGTLFSLYTYEGKGRQNRKLAVAYHKRRNGRSQFTIAQNVKGLLSSSDDSFLGTVIANFMGSKYHIWDQGYRHDCWGKQPKPPLAVVAFIPTIATCTGSYRGMRAYVPKHQSMSLKNTSQVQHIKGLPTDWEEKLDKVHQLYSRVPIYNKISKQFELDFRDKGRPGLQIQASVKNFQLTLEENGKQTILQLGRVAKSKFVLDYRYPLTGYQAFCICLASIDTKLCCSV 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4832g00024 411 Pfam Tub family 159 405 IPR000007 -
Pral4832g00024 411 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Pral4832g00024 411 PRINTS Tubby superfamily signature 367 386 IPR000007 -
Pral4832g00024 411 PRINTS Tubby superfamily signature 234 258 IPR000007 -
Pral4832g00024 411 PRINTS Tubby superfamily signature 388 410 IPR000007 -
Pral4832g00024 411 MobiDBLite consensus disorder prediction 57 94 - -
Pral4832g00024 411 PANTHER TUBBY-RELATED 78 408 - -
Pral4832g00024 411 Gene3D Tubby Protein; Chain A 150 410 IPR025659 -
Pral4832g00024 411 SUPERFAMILY Tubby C-terminal domain-like 146 409 IPR025659 -
Pral4832g00024 411 MobiDBLite consensus disorder prediction 57 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4832g00024 Pral-Chr4832 196452 200707 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4832g00024 59 304 TUB Transcription Factor Family AT1G16070 55.000 4.88e-94 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pral4832g00024 Tub 1.3e-40 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4832g00024 K19600 - cave:132188154 583.948