Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4832g00019 ATGGGGAGGCCGCAACAACGGTATCGCGGAGTGCGGCAGAGGCATTGGGGCTCCTGGGTCTCTGAGATTCGTCACCCCATCTTGAAGAGGAGAATATGGCTGGGAACATTCGAAACGGCAGAAGATGCAGCCAGAGCTTATGATGAAGCTGCCAGGCTCATGTGTGGGCCTCAGGCCATAACCAATCTCTCTCCTCCTCCTCCTTCTTCCTCCTCTAGCTTTCTCTCTCCATCTCTCACAGCCAAGCTTCTGCAAATGTGCCAGATGGCCTCTCTTTCCCTTCAAATCAACAAGCAGCAACGGCATACACAGACCTCTCTCACTCAATATCCTTCCTCCGCCACCAATGCCGTGTCGTCGCCGGAGAATTTTAAACGGGAGGATGAAGAGGAGGAGGAGGATGAGGAACGGCAGTTTCATCAGCTGCAAGTTCTCGAAGATGATCACATTGAGCAGATGATTGAAGAGCTACTTCATTGTGGCTCATTTGAGCTTTGTGATACTAATACTAATCCTACCATGTAA 525 0.5067 MGRPQQRYRGVRQRHWGSWVSEIRHPILKRRIWLGTFETAEDAARAYDEAARLMCGPQAITNLSPPPPSSSSSFLSPSLTAKLLQMCQMASLSLQINKQQRHTQTSLTQYPSSATNAVSSPENFKREDEEEEEDEERQFHQLQVLEDDHIEQMIEELLHCGSFELCDTNTNPTM 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4832g00019 174 Gene3D AP2/ERF domain 6 64 IPR036955 GO:0003700|GO:0006355
Pral4832g00019 174 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 127 - -
Pral4832g00019 174 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Pral4832g00019 174 SUPERFAMILY DNA-binding domain 7 64 IPR016177 GO:0003677
Pral4832g00019 174 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Pral4832g00019 174 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Pral4832g00019 174 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Pral4832g00019 174 MobiDBLite consensus disorder prediction 103 121 - -
Pral4832g00019 174 CDD AP2 6 62 IPR001471 GO:0003700|GO:0006355
Pral4832g00019 174 MobiDBLite consensus disorder prediction 103 136 - -
Pral4832g00019 174 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Pral4832g00019 174 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4832g00019 Pral-Chr4832 137410 138159 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4832g00019 1 166 AP2-EREBP Transcription Factor Family AT5G25190 56.322 3.63e-57 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4832g00019 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4832g00019 - - qsa:O6P43_017963 162.155