Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4832g00018 ATGGGGAGGCCGCAACAACGGTATCGCGGAGTGCGGCAGAGGCATTGGGGCTCCTGGGTCTCTGAGATTCGTCACCCCATCTTAATATGGCTGGGAACATTCGAAACGGCAGAAGATGCAGCCAGAGCTTATGATGAAGCTGCCAGGCTCATGTGTGGGCCTCAGGCCATAACCAATCTCTCTCCTCCTCCTCCTTCTTCCTCCTCTAGCTTTCTCTCTCCATCTCTCACAGCCAAGCTTCTGCAAATGTGCCAGATGGCCTCTCTTTCCCTTCAAATCAACAAGCAGCAACGGCATACACAGACCTCTCTCACTCAATATCCTTCCTCCGCCACCAATGCCGTGTCGTCGCCGGAGAATTTTAAACGGGAGGATGAAGAGGAGGAGGAGGATGAGGAACGGCAGTTTCATCAGCTGCAAGTTCTCGAAGATGATCACATTGAGCAGATGATTGAAGAGCTACTTCATTGTGGCTCATTTGAGCTTTGTGATACTAATACTAATCCTACCATGTAA 516 0.5058 MGRPQQRYRGVRQRHWGSWVSEIRHPILIWLGTFETAEDAARAYDEAARLMCGPQAITNLSPPPPSSSSSFLSPSLTAKLLQMCQMASLSLQINKQQRHTQTSLTQYPSSATNAVSSPENFKREDEEEEEDEERQFHQLQVLEDDHIEQMIEELLHCGSFELCDTNTNPTM 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4832g00018 171 CDD AP2 6 59 IPR001471 GO:0003700|GO:0006355
Pral4832g00018 171 ProSiteProfiles AP2/ERF domain profile. 7 61 IPR001471 GO:0003700|GO:0006355
Pral4832g00018 171 MobiDBLite consensus disorder prediction 100 118 - -
Pral4832g00018 171 MobiDBLite consensus disorder prediction 100 133 - -
Pral4832g00018 171 PRINTS Ethylene responsive element binding protein signature 27 43 IPR001471 GO:0003700|GO:0006355
Pral4832g00018 171 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Pral4832g00018 171 SMART rav1_2 7 67 IPR001471 GO:0003700|GO:0006355
Pral4832g00018 171 Gene3D AP2/ERF domain 6 61 IPR036955 GO:0003700|GO:0006355
Pral4832g00018 171 SUPERFAMILY DNA-binding domain 7 61 IPR016177 GO:0003677
Pral4832g00018 171 Pfam AP2 domain 7 53 IPR001471 GO:0003700|GO:0006355
Pral4832g00018 171 FunFam Ethylene-responsive transcription factor 2 6 62 - -
Pral4832g00018 171 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4832g00018 Pral-Chr4832 137410 138159 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4832g00018 1 163 AP2-EREBP Transcription Factor Family AT5G25190 55.172 8.96e-54 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4832g00018 AP2 1.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4832g00018 - - qsa:O6P43_017963 153.295