Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4828g00001 ATAATTATCTCGGTGCTAATATTGCAGCTTAAGCAAAAAATCGAGGACACGGTTGGTGTAGGGAAGGGATCATCCCAAATGTACGCAACCATTGATCTGGAGAAAGCAAGAGTGGGAAGAACCAGGGTTTTGGAAAACACAGATTCCAGTCTCAGATGGCAAGAATCTTTCCACATATACTGTGCCCACGTCGCATCCAACGTCATCTTCACCGTCAAAGGCGTCAACAAGATCGGCGCCACCTTAATCGGACGAGCCTACGTCCCCGTCGACAACATCATCGGCGGTGACACCTACGATGAATGGCTCGATATCTTAAACGAAGAAAAAGAACCCATCGGCTCCAAAATCCACGTCAAGCTCCAATACTTCGACGTCACAAAAGACAGAAACTGGAATCGAGGCATTCGGAGCCCTAAATACCCAGGAGTACCCTACACTTTCTTCTCACAAAGACAAGGTTGTAAGGTTACCTTGTACCATGACGCTCATGTCCCTGAAGATTTCATTCCCAGAATCCCCCTCTCAGAAGACAAGTATTATGAACCTCATCGATGTTGGGAAGATGTTTTCGACGCAATTAGAAATGCAAAGCACTTTATATACATCACTGGTTGGTCTGTTTACACTGAGATTAAACTAGTGAGAGATGCTAAGAGGCCAAAAGATGGAGGTCACATGACACTAGGACAGCTTCTGAAAGATAAAGCAAATGAAGGGGTTAAGGTTTTGATGCTTGTTTGGGACGATAGAACTTCTGTTAGTCTGTTAAAAAAGGACGGGTTAATGGCAACACATGATGAAGAAACTGAGAAATTCTTTCAAGATACTCCAGTTCACTGTGTTTTATGCCCTCGTGATCCCGACGAAGGTGCCGGGAGTATAATACAGGACGTACAGATTTCCACCATGTTCACTCATCACCAGAAGATCGTGGTGGTGGACGGTGAGCTTCCGGGACGAGGGTCGTCCAGCAAGAGAAGAATAGCGAGTTTCGTCGGTGGGCTTGATTTATGCGACGGAAGATACGACACTGCGTTTCATTCACTTTTCAGAACGTTGGACACTGCTCATCACGATGACTTTCATCAACCTAACTTCGCCGGCGCCGACATCAACAAAGGTGGACCCCGGGAGCCGTGGCACGATATACATTCGCGTCTGGAAGGACCCGTTGCTTGGGATGTTTTGTTTAATTTTGAACAGAGATGGAAGAAGCAAGGAGGGAAGGATGTGCTCGTCTCCCATGGAGAGCTCGAGGAGATAGTTATTCCGCCATCTCCGGTGATGTTCCCGGAGGATCACGAGACGTGGAATGTTCAGTTGTTCCGATCCATCGACGGCGGCGCTGCCTTTGGCTTCCCAGATAGCCCAGAAGAAGCAGCCGACGCCGGGCTCGTGAGTGGAAAAAACAACATCGTAGACAGAAGCATTCAAGATGCATATATCCATGCAATAAGACGAGCGAGGAAGTTCATATACATAGAGAATCAGTATTTTCTGGGAAGCTCATATGCGTGGAGCGCTGAAGATGGCGACATAAAGCCGGAAGAAATTAACGCACTTCACGTCATACCCAAAGAACTATCACTGAAAATCGTAAGCAAGATCGAAGCAGGAGAGAGATTCACGGTGTACGTGGTGATTCCGATGTGGCCGGAGGGCATACCAGACAGCGGCTCCGTGCAGGCAATATTAGATTGGCAGAGAAGAACGATGGACACAATGTATAAAGACATTGTCGAAGCTTTGGAGGCAAAGGGAATAAGGGAAGATCCTCGCAAGTACTTAACATTCTTCTGTCTGGGAAACAGAGAAGTGAAACGAGACGGCGAGTATGAACCACCGGAACAACCAGAACCTGATACCCCTTATGAAAAAGCCCAGAAAGCTCGTCGCTTCATGATTTATGTTCACACCAAGATGATGATAGTGGATGATGAGTACATAATCGTGGGATCTGCGAACATAAACCAGAGGTCAATGGATGGATCAAGGGACACAGAGATAGCGATGGGGGCATATCAGCCGTATCATTTGGCGACGAGCAGGGGGCCGGCGAGGGGACAGATCCATGGATTCCGAATGGCGTTGTGGTATGAGCATCTTGGGGTGATGGAGGAGTGTTTCAATCACCCAGAAAGTGAAGAATGTGTGGAGAAGGTGAACCAGATGGCTGATAAGTACTGGGAATTGTACTCAGATGAATCATTTGAAGAAGATCTTCCAGGGCATTTGCTGCGATATCCTGTGAAGATTTCTAGGGAAGGGCGAGTTCAAGAACTGCAAGGCTTTGAGTTCTTCCCTGATACACAGGCTCGTATTCTTGGTGCCAAGTCAGACTACATGCCACCAATCCTCACTACTTAA 2370 0.473 IIISVLILQLKQKIEDTVGVGKGSSQMYATIDLEKARVGRTRVLENTDSSLRWQESFHIYCAHVASNVIFTVKGVNKIGATLIGRAYVPVDNIIGGDTYDEWLDILNEEKEPIGSKIHVKLQYFDVTKDRNWNRGIRSPKYPGVPYTFFSQRQGCKVTLYHDAHVPEDFIPRIPLSEDKYYEPHRCWEDVFDAIRNAKHFIYITGWSVYTEIKLVRDAKRPKDGGHMTLGQLLKDKANEGVKVLMLVWDDRTSVSLLKKDGLMATHDEETEKFFQDTPVHCVLCPRDPDEGAGSIIQDVQISTMFTHHQKIVVVDGELPGRGSSSKRRIASFVGGLDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFAGADINKGGPREPWHDIHSRLEGPVAWDVLFNFEQRWKKQGGKDVLVSHGELEEIVIPPSPVMFPEDHETWNVQLFRSIDGGAAFGFPDSPEEAADAGLVSGKNNIVDRSIQDAYIHAIRRARKFIYIENQYFLGSSYAWSAEDGDIKPEEINALHVIPKELSLKIVSKIEAGERFTVYVVIPMWPEGIPDSGSVQAILDWQRRTMDTMYKDIVEALEAKGIREDPRKYLTFFCLGNREVKRDGEYEPPEQPEPDTPYEKAQKARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGSRDTEIAMGAYQPYHLATSRGPARGQIHGFRMALWYEHLGVMEECFNHPESEECVEKVNQMADKYWELYSDESFEEDLPGHLLRYPVKISREGRVQELQGFEFFPDTQARILGAKSDYMPPILTT 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4828g00001 789 FunFam Phospholipase D 445 680 - -
Pral4828g00001 789 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 19 126 IPR035892 -
Pral4828g00001 789 SMART pld_4 634 661 IPR001736 GO:0003824
Pral4828g00001 789 SMART pld_4 303 342 IPR001736 GO:0003824
Pral4828g00001 789 SUPERFAMILY Phospholipase D/nuclease 127 414 - -
Pral4828g00001 789 PANTHER PHOSPHOLIPASE D 24 777 IPR015679 -
Pral4828g00001 789 Pfam Phospholipase D C terminal 707 779 IPR024632 -
Pral4828g00001 789 Pfam C2 domain 17 104 IPR000008 -
Pral4828g00001 789 Gene3D C2 domain 3 135 IPR035892 -
Pral4828g00001 789 SUPERFAMILY Phospholipase D/nuclease 466 719 - -
Pral4828g00001 789 PIRSF PLD_plant 3 789 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Pral4828g00001 789 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 303 342 IPR001736 GO:0003824
Pral4828g00001 789 Gene3D Endonuclease Chain A 449 678 - -
Pral4828g00001 789 FunFam Phospholipase D delta 177 422 - -
Pral4828g00001 789 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 634 661 IPR001736 GO:0003824
Pral4828g00001 789 SMART C2_3c 2 102 IPR000008 -
Pral4828g00001 789 Gene3D Endonuclease Chain A 174 421 - -
Pral4828g00001 789 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Pral4828g00001 789 Pfam Phospholipase D Active site motif 635 661 IPR001736 GO:0003824
Pral4828g00001 789 Pfam Phospholipase D Active site motif 303 342 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4828g00001 Pral-Chr4828 1086 3538 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4828g00001 4 789 Phospholipase D Gene Family (Wang group) AT1G52570 75.539 0.0 1262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4828g00001 K01115 - gmx:100786410 1316.6