Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4827g00013 ATGGTGCAATCAAAGAAGTTCAGAGGTGTCAGACAGCGTCATTGGGGCTCATGGGTTTCTGAGATTCGCCATCCTTTATTGAAAAGAAGGGTGTGGCTAGGGACGTTTGATACTGCAGAAGAAGCCGCACGAGCATACGATGAAGCAGCCATTTTGATGAGCGGTAGAAACGCCAAAACAAACTTCCCAGTGGCCGCCAATAACAACAATAACAATCAAAATCACCATTCTTCATCTTCTTCGTCCTCCTCCTCATCTTTTTCTGAAGCTCTCAGTGCAAAGCTTCGGAAGTGCTGTAAATCCCCATCGCCATCTCTTACTTGCCTGAGGCTGGACACAGAGAACTGCCACATAGGAGTGTGGCAGAAGCGAGCAGGGCCTCGCTCTGACTCCAACTGGGTCATGATGGTGGAACTGGAAAGGAAGAAACTTGAAGGCTCAGAGATGACGAGGGAGTCGCCGGCGCCGGAGACGGAGGAGGAAGAGAAGGTGAAACCAGAAGAAGAAAACAGTGAGCTGGACGAGGAACAGAAGATGGCGTTGCAGATGATAGAAGAACTCCTTAATAGGAATTGA 576 0.4913 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFDTAEEAARAYDEAAILMSGRNAKTNFPVAANNNNNNQNHHSSSSSSSSSSFSEALSAKLRKCCKSPSPSLTCLRLDTENCHIGVWQKRAGPRSDSNWVMMVELERKKLEGSEMTRESPAPETEEEEKVKPEEENSELDEEQKMALQMIEELLNRN 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4827g00013 191 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Pral4827g00013 191 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Pral4827g00013 191 Coils Coil 170 190 - -
Pral4827g00013 191 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Pral4827g00013 191 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Pral4827g00013 191 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 156 - -
Pral4827g00013 191 MobiDBLite consensus disorder prediction 144 177 - -
Pral4827g00013 191 MobiDBLite consensus disorder prediction 62 85 - -
Pral4827g00013 191 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Pral4827g00013 191 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Pral4827g00013 191 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Pral4827g00013 191 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Pral4827g00013 191 MobiDBLite consensus disorder prediction 144 161 - -
Pral4827g00013 191 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4827g00013 Pral-Chr4827 97110 98573 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4827g00013 1 191 AP2-EREBP Transcription Factor Family AT1G15360 65.686 2.49e-80 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4827g00013 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4827g00013 - - gmx:100785898 264.618