Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4827g00002 ATGGCGCGTGATGCTGATGGAGTTGGCTGTTCTTCAAGCTCTTTTGATTCAACTAAGAGATGGAAGTATCATGTGTTTTTGAGCTTTCGAGGGGAAGATACTCGGAAAAATTTTACTGATCATTTGTATGCTGCATTAAAACGCAAAGGATTTAGAACTTTTCGGGATGAGGAAGAACTGGAAAGGGGAGAATCTATTAATCCAAGTTTAATACAAGCAATTGAAGAATCTCGTTCTGCAATTATTGTGCTCTCCCCAAATTATGCTTCTTCAACTTGGTGTTTGGATGAGCTTCAAAAGATCCTCCTGTTGAAGGAAGAGAGAAGTCTTCAAGTATTTCCGATATTTTATGGTGTAGATCCTTCTGATGTTCGGAAACAAAAGGGAAGTTTTGCAGAAGCATTCATGAAGCATGAAGAAAGATTTGCTGAGGACAAACTAAAGGTGCAAAAGTGGAGAGATGCTTTTGAAAAAGTTGCTACTTTATCTGGTTGGGACTCAAAAAATCGGTATGAAAGCGAATTCATTGAAAGCATTGCTGAAGAAATGGGGTCAAAGTTACTTGATAAATCCGCATATGGTCATGGCAAGTTAATTGGAATTGAACCAAAATTAGAAAAATTGAAGTCAATTGTAGCAAGGGAATCAGGAGGAGTTGGGTTTATAGGAATATGGGGCACAGGAGGTGTAGGCAAAACAACTCTTGCTAGAGCCTTTTATGAGCGGGAGCGAGAGCGCAAAAACTTTGAGATCCACTGCTTCCTTAATAATATTAGAGAGGCATGGGAAAAAGAAGGTTTGATTTCATTGCCAAGAAAACTTATTTCTTCTCTGGATAAAAAGAGTATGGAAGTGGCTGATTTTTATGAAGGAATGGAGTTAATAAAAAGCAAGTTGACTGACAGAAAAATCCTACTTGTCCTTGATGATGTGAGTGATATTAGGCAACTTGAAAATTTGGCTCCCAAGCAAGGATGGTTCAGCGAAGGGAGCATAATAATAATAACAACTAGGGATAAGCAATTGTTATCATCACACGGTGTATCTGCTGTGTATGAATTCAAATTATTGAGTGATAAAGAGTCCCTTGAACTTTTCCTTCAAAAAGCTTTTAAAGAAGAGCATCCTAATGAAGATTATTTGAAACTTGCTAGAACCGTCATTAAGTATGCTGGAGGCCTTCCTTTAGTGCTCACAGTGTTAGGTTCATCTCTTTGCAAAAGACCTGTAGTGGAATGGAAGGATGAACTAGCTAAGCTCAAGAAAATTCCTCCAAAGGATATTTTGAAGATACTTCAAGTGAGTTTTGATGGACTGGATGATCAGCAGAAAACTATATTCTTGGATATTGCTTGCTTTTTCAATGGGATGGACAAAGATCATGTCATACAAATTTTAGAAACTTTGGATAAGGATCTTCACCCAAAAACTGGGATAAATGTTCTCATTAAGAAATCACTAATAATTACTTATGAAGGGCATTTGTGGGTGCATGAAATTCTCCAAGACATGTGTAAATATATTGTCTATCAAGAATCACCTTATGATGCAGGCAAGCGTTCCAGGATATTGTCTTTGGAGGATGCCAATCATTCTCTCCCAAGCTTGAAGTCCCTTGATTTATCTCATTCAGAATACCTCATCGAAACCCCAAATTTTGATAGAATTCCTCATCTTGAAAAACTGATTCTTGAAGGGTGTTCTAACTTAGTTGAAGTTCACCAGTCTCTTGGGCAACATAAGAGGCTTGTCACTGTTGACTTGAAAGATTGCGAAAAAGTTAAAACCCTTCCAGAAAAGTTTGAGATCAATGGCTTGGAGACTTTTATTCTATCAGGTTGTTCAAAAGTTAGAAAACTTCCTCAGTTTGGAAAAGATATGACACGTCTATCTAAGCTTGATTTAGAGAAGACTGCTATAGCCAAACTACCTCACTCATTGGGCAATTTGATTGGTCTCGTTGAATTAAATTTGACGAACTGCAAAAAGCTGATCTGTCTTCCATGTAGTGTTAGTAAGTTGAAAGCTCTGAAAGTTATCAAAATTTCTCGGTGCTCAAAGTTTTCAAGGCTGCCAGAGAATTTGAATGAAAATGAAGCTTTGGAAGTGCTGGATTTGAGTGGGATTGCTATAAAAGGGTTGTCATTTAGTAACTACAATGGTGAAGCACAATCATCATCATCATGGAGTTGCTTCTCCCTTTTTCAAAGCCCTTCAAGGTCAACAAGTTTTATGCTGTTGCCGTCTTTGTCATCATTGACACATTTATGTTTACAAAACTGCAATCTCCATGACGCATCACTTCCCGATGATATCAGCATGTTATCATCACTGGAAAAGTTAAATCTAAGTCACAACAATTTCATTGACGTACCATCTGGCCTCATTTCCAATCTTTCGAAGCTTAAAACTATTGGTCTCTGTAGTTGCCCAAGGCTTCGGTCTTTGCCGCAACTTCCATCAAATCTATCATGTATATGTGCTGATGATTCCTCATCAATGAAACATTACGGACGTGCACACCAATTATGGGATTTCATTGAATCATTTCAACCTCAGGTTCGCAACCATTTAAATATGAAGTCAGCGATTGTAAAAGGGGATTCAGAAATTTTAATTTCCCTCTGTCCACCTTTTCGCGCATTAACAATTGAAGGGAGCAAAGTACCATCATGGTTTTATAATCAAAACTACTTTTGCGAGAAAGAATTCTGGTGGTGTCCAAATGTGTCGTTCATAATAAATATATCCCCTGATTATTGTGGTTCACGTGAATGGTTGGGCATAGCCATATGCTTAGTCATAGAAAAGGATCGCGCATTTGGAGAAGGGATGGATGCAATTTGTTGGAGCTGCAGACTTCCTAATGATGAATTTCCAAACTCGTATCATGTGAGTCATGTTTATTTAAATAAGGCTGGGAGTCCTCAGCTTCATATAATATATATTCCTCATTCCTCTTTGCTTATAAACGGATCCCAAATGGTATTTTTCTCTGAGAATGCAATGAAAAATAAGTCACCAAGGATGAAAATAAGCAAGTGTGGGTGGCAAGCGGTGTGCAAAGAAGATGTCGAAGCATGGCGAAGAACAAGGGACGAAGGTTGTAGTATCATCAATAACCACGTAAAGATTGATCCAGCCATCAACAGTGAAGGTTATGGTCCCTGGCCGAGACATGATGATACCGTTGTAGAAGTGGATGGCGCCTGTTCTCATTTAGATGACAAAGCGGCTTGTGGTGGCGTTCTTAAAGATGGCAACAATTGTATGAAGGAGGCTTTTCTTCTGAAATTAAGTGGTGGAGATATCCTCACAGCAAAACTATGGGGTTGCCTGATGGGTCTCAAAAGAGCTTGGGACGCTGGTATTGGATATGTTATCTTGAGAAGCGACTCCACTGAGACTGTTCGATTGATCAAATTTGAAGTTCCTGAGACGCACAAGGATATTGCTGTGATCATGGAAATTAAAGGGATGTTAGAGCGGAAATGGTTTGTGGATATCCAAGTCTTTCATAGAGACGGCAATGTCATTGCTGGTTTACTTGCTAAAAGAGCACTTAAAGGAGCAATGGGTCTGCAAATCCTAGGCCCTAAGACAATGATGAAAATATTGCAGGCCACTGGTGTTACACTCGCAGAAGATGAGAAAGATGGAGGTTATACTCAATGCTCTAGACATCATGATCAGTTTGTTGTTGAAGAAGATGAGTCTATACTTCCAAGTGAGTCAGACAGCTTCAACAATCCCCATAATGAGGTTGAGAACAGAGAGGGGTTTCGTTGTTGGGAGTGGATGTCAAACTTTTGGCATTCTCTTGAGCATCTATTTCAGACTTAG 3843 0.3898 MARDADGVGCSSSSFDSTKRWKYHVFLSFRGEDTRKNFTDHLYAALKRKGFRTFRDEEELERGESINPSLIQAIEESRSAIIVLSPNYASSTWCLDELQKILLLKEERSLQVFPIFYGVDPSDVRKQKGSFAEAFMKHEERFAEDKLKVQKWRDAFEKVATLSGWDSKNRYESEFIESIAEEMGSKLLDKSAYGHGKLIGIEPKLEKLKSIVARESGGVGFIGIWGTGGVGKTTLARAFYERERERKNFEIHCFLNNIREAWEKEGLISLPRKLISSLDKKSMEVADFYEGMELIKSKLTDRKILLVLDDVSDIRQLENLAPKQGWFSEGSIIIITTRDKQLLSSHGVSAVYEFKLLSDKESLELFLQKAFKEEHPNEDYLKLARTVIKYAGGLPLVLTVLGSSLCKRPVVEWKDELAKLKKIPPKDILKILQVSFDGLDDQQKTIFLDIACFFNGMDKDHVIQILETLDKDLHPKTGINVLIKKSLIITYEGHLWVHEILQDMCKYIVYQESPYDAGKRSRILSLEDANHSLPSLKSLDLSHSEYLIETPNFDRIPHLEKLILEGCSNLVEVHQSLGQHKRLVTVDLKDCEKVKTLPEKFEINGLETFILSGCSKVRKLPQFGKDMTRLSKLDLEKTAIAKLPHSLGNLIGLVELNLTNCKKLICLPCSVSKLKALKVIKISRCSKFSRLPENLNENEALEVLDLSGIAIKGLSFSNYNGEAQSSSSWSCFSLFQSPSRSTSFMLLPSLSSLTHLCLQNCNLHDASLPDDISMLSSLEKLNLSHNNFIDVPSGLISNLSKLKTIGLCSCPRLRSLPQLPSNLSCICADDSSSMKHYGRAHQLWDFIESFQPQVRNHLNMKSAIVKGDSEILISLCPPFRALTIEGSKVPSWFYNQNYFCEKEFWWCPNVSFIINISPDYCGSREWLGIAICLVIEKDRAFGEGMDAICWSCRLPNDEFPNSYHVSHVYLNKAGSPQLHIIYIPHSSLLINGSQMVFFSENAMKNKSPRMKISKCGWQAVCKEDVEAWRRTRDEGCSIINNHVKIDPAINSEGYGPWPRHDDTVVEVDGACSHLDDKAACGGVLKDGNNCMKEAFLLKLSGGDILTAKLWGCLMGLKRAWDAGIGYVILRSDSTETVRLIKFEVPETHKDIAVIMEIKGMLERKWFVDIQVFHRDGNVIAGLLAKRALKGAMGLQILGPKTMMKILQATGVTLAEDEKDGGYTQCSRHHDQFVVEEDESILPSESDSFNNPHNEVENREGFRCWEWMSNFWHSLEHLFQT 1280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4827g00002 1280 ProSiteProfiles TIR domain profile. 21 187 IPR000157 GO:0007165
Pral4827g00002 1280 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 528 IPR044974 GO:0006952
Pral4827g00002 1280 PRINTS Disease resistance protein signature 221 236 - -
Pral4827g00002 1280 PRINTS Disease resistance protein signature 298 312 - -
Pral4827g00002 1280 PRINTS Disease resistance protein signature 531 547 - -
Pral4827g00002 1280 PRINTS Disease resistance protein signature 391 405 - -
Pral4827g00002 1280 Gene3D - 16 191 IPR035897 -
Pral4827g00002 1280 Gene3D - 1062 1189 IPR036397 GO:0003676
Pral4827g00002 1280 ProSiteProfiles Leucine-rich repeat profile. 777 798 IPR001611 GO:0005515
Pral4827g00002 1280 SUPERFAMILY "Winged helix" DNA-binding domain 427 529 IPR036390 -
Pral4827g00002 1280 Gene3D Ribonuclease Inhibitor 519 626 IPR032675 -
Pral4827g00002 1280 SMART till_3 22 162 IPR000157 GO:0007165
Pral4827g00002 1280 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 165 IPR035897 -
Pral4827g00002 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 450 IPR027417 -
Pral4827g00002 1280 Pfam NB-ARC domain 205 423 IPR002182 GO:0043531
Pral4827g00002 1280 Gene3D - 192 350 IPR027417 -
Pral4827g00002 1280 Pfam TIR domain 22 188 IPR000157 GO:0007165
Pral4827g00002 1280 Gene3D Ribonuclease Inhibitor 627 837 IPR032675 -
Pral4827g00002 1280 CDD RNase_H_like 1067 1185 IPR044730 -
Pral4827g00002 1280 SMART LRR_typ_2 750 774 IPR003591 -
Pral4827g00002 1280 SMART LRR_typ_2 627 650 IPR003591 -
Pral4827g00002 1280 SMART LRR_typ_2 775 798 IPR003591 -
Pral4827g00002 1280 Gene3D - 356 440 IPR042197 -
Pral4827g00002 1280 SUPERFAMILY L domain-like 522 824 - -
Pral4827g00002 1280 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 189 - -
Pral4827g00002 1280 Pfam Reverse transcriptase-like 1067 1187 IPR002156 GO:0003676|GO:0004523
Pral4827g00002 1280 SUPERFAMILY Ribonuclease H-like 1062 1190 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4827g00002 Pral-Chr4827 18932 26334 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4827g00002 199 835 WRKY Transcription Factor Family AT5G45050 28.697 4.34e-54 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4827g00002 - - pcin:129317383 804.283