Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4826g00008 ATGAGTAACGCTTCTTCTTCCGCGTGTCAATTTGATGGTGATGAGAAGTACCCTGCTTCATTTGACTTTGAATCCGAGCACCCATCGTTCAAGAGGCACGCAAATCCATCGACACTTTCGAATTCGAGGGCACAGGTACTGAACGATGCGAGGACCCGCTATTTCAAGACTCAACTCTGCAGAAGGTTTAGACAGGGAATTTGTACACTTGGGTCCGATTGTAGTTTTGCTCATAGCGTTGGAGAGCTTCGAAGGCAAGAATTGGGTAATGACGATAGAAGATTACAGGAGTCCAAACTATGCAGAATGTTCTATCAAGGGCAACAATGCTATTATGGAAACACCTGCCGTTTCCTTCATACAAGACCTGGCAGTGTGAATTCTAGAGGCAATGCAACAGTAGAAGTAATTCCTACCGGACACGGTAAAAGAAAATATGATCAAGTAGAATCCCAGAGCGGGTTTGATGAGAGTTCTGATGCTGAATTGAATCCTAGGAGAGAGCCGCTGAAAACGAAGCTGTGTATCAAGTGGGACATGAAAGGACATTGCCCGTATGGACATATGTGTCGCTTTGCTCATGGGCAAGCCGAATTAGGGAAGACTGATGGCTACTCAACTGCTGAAGGAAGGGTAGTGCGAACTTCTGCTACTGCTACTACAAAAGTGTCGAGTGGTGTAGTATCAACCAGTAGTTTGCTTCAAAATTTGAAAGAATCATTTTCAGGAAATTACAAATTCAACAGAAATGAACTACACAGGATCAGTCGCATCTATGCTGATTGGATTTAA 792 0.4381 MSNASSSACQFDGDEKYPASFDFESEHPSFKRHANPSTLSNSRAQVLNDARTRYFKTQLCRRFRQGICTLGSDCSFAHSVGELRRQELGNDDRRLQESKLCRMFYQGQQCYYGNTCRFLHTRPGSVNSRGNATVEVIPTGHGKRKYDQVESQSGFDESSDAELNPRREPLKTKLCIKWDMKGHCPYGHMCRFAHGQAELGKTDGYSTAEGRVVRTSATATTKVSSGVVSTSSLLQNLKESFSGNYKFNRNELHRISRIYADWI 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4826g00008 263 Gene3D - 166 201 - -
Pral4826g00008 263 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 55 79 IPR000571 GO:0046872
Pral4826g00008 263 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 171 196 IPR000571 GO:0046872
Pral4826g00008 263 SUPERFAMILY CCCH zinc finger 96 122 IPR036855 GO:0046872
Pral4826g00008 263 ProSiteProfiles Zinc finger C3H1-type profile. 169 197 IPR000571 GO:0046872
Pral4826g00008 263 Pfam CCCH-type zinc finger 99 120 IPR041367 -
Pral4826g00008 263 SMART c3hfinal6 97 122 IPR000571 GO:0046872
Pral4826g00008 263 SMART c3hfinal6 169 196 IPR000571 GO:0046872
Pral4826g00008 263 SMART c3hfinal6 54 80 IPR000571 GO:0046872
Pral4826g00008 263 ProSiteProfiles Zinc finger C3H1-type profile. 95 123 IPR000571 GO:0046872
Pral4826g00008 263 SUPERFAMILY CCCH zinc finger 53 84 IPR036855 GO:0046872
Pral4826g00008 263 Gene3D - 50 132 - -
Pral4826g00008 263 SUPERFAMILY CCCH zinc finger 170 199 IPR036855 GO:0046872
Pral4826g00008 263 ProSiteProfiles Zinc finger C3H1-type profile. 54 81 IPR000571 GO:0046872
Pral4826g00008 263 PANTHER CCCH ZINC FINGER/TIS11-RELATED 5 123 IPR045877 GO:0003729
Pral4826g00008 263 FunFam Zinc finger CCCH domain-containing protein 164 201 - -
Pral4826g00008 263 MobiDBLite consensus disorder prediction 140 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4826g00008 Pral-Chr4826 51443 53642 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4826g00008 171 199 C3H Transcription Factor Family AT1G68200 62.069 6.05e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral4826g00008 zf-CCCH 2.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4826g00008 - - pcin:129288651 399.438