Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4822g00001 ATGATGGACGGAGTTCATGGCGGTATGGCGAGTTCCGCGGTGGCGAATGTGAATTCTCCGCCGCCATTCCTCAGCAAGACCTATGACATGGTCGACGACCCTTCCACAAACTTGGTGGTCTCATGGAGTGATAATAACAACAGCTTTGTTGTTTGGGATGTGCCCGAATTCGCTAGGGACATCTTGCCCAAGTATTTTAAGCACAACAATTTCTCCAGCTTCGTCAGGCAATTGAATACTTACGGTTTTAGAAAGGTTGATCCAGACCGCTGGGAATTTGCAAATGAAGGATTTTTGAGAGGTCAGAAACAACTTTTGAAGGGTATCAGTCGGAGGAAACCTGCTCAAGTGAACGGTAGTCAACAGCAATCTCCGGCACAGAACAAACCTGTTGCGGCATGTATTGAGGTTGGAAAGTTTGGGCTTGAAGAAGAGGTTGAAAGATTGAAAAGGGATAAGAATGTTCTTATGCAAGAACTTGTTAGGTTGAGACAACAACAACAAGCAACTGATAACCAATTGCAAAGTGTTGGGCAACGTGTACAGGTTATGGAGCAGCGTCAACAACAAATGATGTCATTTCTGGCAAAGGCCATGCAAAGCCCAGGATTCTTGGGACAGTTTGTACAGCAGCATAGTGACAGTAACAGACATATTACTGGTGGCAATAAAAAGAGGAGGCTTCACAGGCAGGATGAAGGTACATTACCCTCTGATCATCTCTATGATGCTCCTGATGGACGTGTTATTAAATATCAACCTTCTATGAATGAGGCTGCAAAAGCAGTATTGCGCCAGATATTGCAGATGAATACTTCTTCAAGGAGGGAATCATCAATAAATAACTCCGATGCTTTTCTTATTGATGATGTTCCTTCTGCCATTGCATTAGATAGTGGGAGTTCCTCTAGCCGGGCTTCAGGAGTGACTCTTTCTGAGGTTACACCTACTTCTGGCCAGTCTTATATGGCAGGGCAATCGCAATTGCCTGTTAATCGTACTCCCACCAACACATCTGAGATGCAATCTTCCGGTGCTGTGTTGACAGACCCTGTTAAAGTAGCTGAATTTCCAGGATTAAATTTACATAATTGCCCAGAGAATGTTTTGGGTATTGGTGAAGTCCAAGGTGTGGAGACAGAGAGCAGTTTAGTGAATCCTGAACTCACTTTTGCGGGGCCTGACACTGGGAATGCGGGGGACATAGACATGATGTCAGCAGTTTTGGATGGGACACAGTCTGTAGAATTAGAAACTGATGCCTTTTCACCTGATCCAGATGGAATTTCTAAGCTCCCAAGCATTAGTGATGTTTTCTGGGAACAGTTTCTCACAGCAAGTCCGCTTACAGGCGATACAGATGAAATCAGTTCTTGCTCTCTTGGAGATGGTTTGACTAAGGAAGGCGAAGTTCCATCTAGAAGGGAGAATGGACAGGAAAAGTTGGATAAGATAAAACATATCGATCATCTTACTCAACAGATGGAACTTCTTGCTTCCAAAACTTCCTAA 1512 0.4411 MMDGVHGGMASSAVANVNSPPPFLSKTYDMVDDPSTNLVVSWSDNNNSFVVWDVPEFARDILPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQLLKGISRRKPAQVNGSQQQSPAQNKPVAACIEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQLQSVGQRVQVMEQRQQQMMSFLAKAMQSPGFLGQFVQQHSDSNRHITGGNKKRRLHRQDEGTLPSDHLYDAPDGRVIKYQPSMNEAAKAVLRQILQMNTSSRRESSINNSDAFLIDDVPSAIALDSGSSSSRASGVTLSEVTPTSGQSYMAGQSQLPVNRTPTNTSEMQSSGAVLTDPVKVAEFPGLNLHNCPENVLGIGEVQGVETESSLVNPELTFAGPDTGNAGDIDMMSAVLDGTQSVELETDAFSPDPDGISKLPSISDVFWEQFLTASPLTGDTDEISSCSLGDGLTKEGEVPSRRENGQEKLDKIKHIDHLTQQMELLASKTS 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4822g00001 503 FunFam Heat shock transcription factor 1 16 113 - -
Pral4822g00001 503 MobiDBLite consensus disorder prediction 218 239 - -
Pral4822g00001 503 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 317 IPR027725 -
Pral4822g00001 503 Pfam HSF-type DNA-binding 23 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4822g00001 503 ProSitePatterns HSF-type DNA-binding domain signature. 62 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4822g00001 503 Coils Coil 139 166 - -
Pral4822g00001 503 MobiDBLite consensus disorder prediction 216 242 - -
Pral4822g00001 503 MobiDBLite consensus disorder prediction 114 129 - -
Pral4822g00001 503 MobiDBLite consensus disorder prediction 111 130 - -
Pral4822g00001 503 MobiDBLite consensus disorder prediction 461 480 - -
Pral4822g00001 503 Gene3D - 15 113 IPR036388 -
Pral4822g00001 503 SUPERFAMILY "Winged helix" DNA-binding domain 18 112 IPR036390 -
Pral4822g00001 503 PRINTS Heat shock factor (HSF) domain signature 23 46 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4822g00001 503 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4822g00001 503 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4822g00001 503 SMART hsfneu3 19 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4822g00001 Pral-Chr4822 7374 12254 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4822g00001 17 502 HSF AT5G16820 54.527 1.13e-157 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pral4822g00001 HSF_DNA-bind 4e-32 CL0123