Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4820g00110 ATGGCGAACCCGGTCGATCCAAGCTCTGGCTTTTGCCCTCAAACCAGAACATTCCATAGTCTTCGTCCTGACGTCCCTCTCCCTCCTCCCTCTCAACCTCTCTCCATCACGGACTACGCTCTCTCTCTCATTCCTCCCACCGCTTCTTCCACCACAGTCCTCATCGACTCCACCACCGACTGCCGTATCTCCTACTCCCTCTTTCTTCAACAAATCAAAAACCTCGCTTCCTCCCTCGCTTCCCTTACCCCTCTTTCCAAAGGCCACGTCGCGTTCATTCTCTCCCCTGCTTCTCTACACATCCCAGTTCTTTACTACTCCCTCCTGTCTTTAGGAGTCACCATCTCACCCGCCAACCCTATCGGCTCTGATTCGGAGGTCGCTCACCAGGTTGAGCTCGCTCAACCTGTCATCGCATTCGCTACCTCCTCCACTGCTCATAAGATCCCCAAGCTTCGATACGGTACCGTCATAATTGACTCGCCTCAGTTCCTTTCCATGATCAATGGAACTTCCGGAATTGGTAATGCTGATGACAGGGGCGTCCGAAGAGTTCAGATGAGCCAATCGGAGCCGGCGGCGATTCTCTTCTCGTCTGGAACAACCGGAAGAGTGAAAGGCGTGTTATTGACTCACAGGAATTTGATTGCCCTCATTGGGGGATTTTACCACCTGAGGCACCTGATGGATTCGCAAGAGAATGAATCCGATCCGGTGTCGCTATTCACGCTGCCACTTTTCCACGTGTTCGGGTTCTTCATGCTGATTAGGGCGATATCCATGGGGGAGACTCTGGTTTTGATGCATAGGTTCGATTTCGAAGGGATGTTAAGAGCGGTAGAAAGGTACAAGATTTCGTACATGCCAGTTTCCCCGCCGCTCATTGTGGCGCTGGCTAAGTCCGAGTTAGTGAACAAGTACGACCTTAGCTCGCTGAAGTTGCTAGGATGCGGCGGGGCGCCGCTTGGCAAGGAGGTGGCCGAGAACTTCAGCGCCAGATTCCCTGATGTGGAAATAGTGCAGGGGTATGGTCTGACTGAAAGTGGAGGTGGGGCAACGAGAATGATAGGATCTGAAGAGGCTAAGCGACATGGCTCTGTAGGTCGACTTGCAGAGAATATGGAAGCCAAGATTGTGGATCCCGTGACCGGAGAGTCATTGCCTCCTGGTCAGAAAGGCGAGCTATGGTTGAAAGGTCCAACAATAATGAAAGGTTATGTAAAAAATGAGGAAGCAACGGCTGAGACATTGGATGCGGAGGGGTGGCTCAAGACTGGAGATCTTTGTTATTTTGATTCTGATGGCTTCCTCTACATTGTAGACAGGCTTAAGGAATTGATCAAATACAAAGCATATCAGGTTCCTCCAGCTGAACTGGAACATGTACTTCACACACACCCTGAAATTGCTGATGCTGCCGTAATTCCGTACCCTGATGAAGAGGCAGGGCAGATTCCAATGGCCTTTGTGGTAAGAAAGCCTGGAAGCAATATCAACGCAGATCAGATTATGGACTTTGTGGCAAAGCAGGTTGCGCCGTACAAGAAGGTGCGACGTGTCGCTTTCATTAATGCCATCCCAAAGAATCCGGCTGGCAAAATTTTGAGAAGAGAATTAGTCGATTCTGCGCTATCAAGTGGTTCTTCCAAATTGTAA 1656 0.5042 MANPVDPSSGFCPQTRTFHSLRPDVPLPPPSQPLSITDYALSLIPPTASSTTVLIDSTTDCRISYSLFLQQIKNLASSLASLTPLSKGHVAFILSPASLHIPVLYYSLLSLGVTISPANPIGSDSEVAHQVELAQPVIAFATSSTAHKIPKLRYGTVIIDSPQFLSMINGTSGIGNADDRGVRRVQMSQSEPAAILFSSGTTGRVKGVLLTHRNLIALIGGFYHLRHLMDSQENESDPVSLFTLPLFHVFGFFMLIRAISMGETLVLMHRFDFEGMLRAVERYKISYMPVSPPLIVALAKSELVNKYDLSSLKLLGCGGAPLGKEVAENFSARFPDVEIVQGYGLTESGGGATRMIGSEEAKRHGSVGRLAENMEAKIVDPVTGESLPPGQKGELWLKGPTIMKGYVKNEEATAETLDAEGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHVLHTHPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNINADQIMDFVAKQVAPYKKVRRVAFINAIPKNPAGKILRRELVDSALSSGSSKL 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4820g00110 551 Pfam AMP-binding enzyme 51 449 IPR000873 -
Pral4820g00110 551 Gene3D - 445 545 IPR045851 -
Pral4820g00110 551 Gene3D - 19 444 IPR042099 -
Pral4820g00110 551 FunFam 4-coumarate--CoA ligase 2 445 546 - -
Pral4820g00110 551 Pfam AMP-binding enzyme C-terminal domain 458 533 IPR025110 -
Pral4820g00110 551 SUPERFAMILY Acetyl-CoA synthetase-like 59 543 - -
Pral4820g00110 551 ProSitePatterns Putative AMP-binding domain signature. 195 206 IPR020845 -
Pral4820g00110 551 CDD 4CL 49 539 - -
Pral4820g00110 551 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4820g00110 Pral-Chr4820 549161 551901 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4820g00110 5 551 Monolignol Biosynthesis Gene Families AT5G63380 63.993 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4820g00110 K01904 - qsa:O6P43_022573 867.84