Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4820g00075 ATGGATTGGAATTTGAAGGGTGGCTCGTGGGATATGACTGAATTAGATGGAGGAGGTTTACCCAACATAGAAACAACAACGGCTGATAACTATGACGGGTCAGGCCGATTTGGATTAGTGAACGGAAGTGGAGGCGAATTTTGCGTTGATTTGAAGCTGGGTCAGGTCGGCAATTCTGGAACTGAGTCTTCAGGGCCCAAGTGGAAAGTCGCCGCCGCTGCTGGCGGCGGCGGCGGAGGCGGAGTCCCCAGGACGGCAGCGTCGACTCCTTCAGGATCATCGAAGAGAGCTCGGGCAATTAACAACGGGATCCAAACGGCGTCGTGCCTTGTGGATGGGTGCAGTTCAGATCTCAGTAATTGTAGGGAGTACCATAGGCGTCACAAGGTGTGCGAGCTCCATTCCAAGGCTCCTGTGGTCACCATTGGTGGCCACAAGCAAAGGTTCTGCCAACAGTGTAGCAGGTTTCATTCACTGGAAGAATTTGATGAAGGGAAGAGAAGCTGCAGGAAGCGATTAGATGGGCACAACCGACGGAGAAGAAAGCCCCAGCCAGTGCCTCTCACCCGGTCTGCTACTTTATTCTCGAATTACCACCAAGGGAGGCAGTTAATACCCTTATCATCGGGCTCAAATCTCTATCCTTCAAGTGCTATGGTGAACACTGGTTGGGACTGGGAATGGGATGCTAGGACGACGATGGTTCATCATAATAATAAACACCAGATATTTCTTGGGTCTTCTGAAAGCGCCAGAATTAAGCAGGAAGTGACGACATATCATGAGAAGCCATGTGCCGAAACTGCTTCTGGGTGCCACACAGTTCTGAGGACGACGGTGGTCAGGCCTGCAGGGTCTTTCTCATCGGCGGAGGAGTCTCCTCCTCCGCCTTGTGCTCTCTCTCTTCTGTCATCACCGCCGGCACCCACGTACCTGTCACAGTCTCTTGGCCCCACCACCCTCCATGATCACGGCTTACAACAGGCCGTGGACACCACGCTTCTGGTGAGCAATGGGACTCAGCCTTCAATGTATAACTTGTTAGGGTCTGATGCATCCCAGGGGATCCATACTTCTCAATCACTTCCATTTCAGTGGGAATAA 1104 0.5226 MDWNLKGGSWDMTELDGGGLPNIETTTADNYDGSGRFGLVNGSGGEFCVDLKLGQVGNSGTESSGPKWKVAAAAGGGGGGGVPRTAASTPSGSSKRARAINNGIQTASCLVDGCSSDLSNCREYHRRHKVCELHSKAPVVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPVPLTRSATLFSNYHQGRQLIPLSSGSNLYPSSAMVNTGWDWEWDARTTMVHHNNKHQIFLGSSESARIKQEVTTYHEKPCAETASGCHTVLRTTVVRPAGSFSSAEESPPPPCALSLLSSPPAPTYLSQSLGPTTLHDHGLQQAVDTTLLVSNGTQPSMYNLLGSDASQGIHTSQSLPFQWE 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4820g00075 367 MobiDBLite consensus disorder prediction 1 21 - -
Pral4820g00075 367 FunFam Squamosa promoter-binding-like protein 14 100 170 - -
Pral4820g00075 367 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 64 322 IPR044817 GO:0003677
Pral4820g00075 367 Pfam SBP domain 109 182 IPR004333 GO:0003677
Pral4820g00075 367 MobiDBLite consensus disorder prediction 74 96 - -
Pral4820g00075 367 Gene3D - 100 170 IPR036893 GO:0003677|GO:0005634
Pral4820g00075 367 ProSiteProfiles Zinc finger SBP-type profile. 106 183 IPR004333 GO:0003677
Pral4820g00075 367 SUPERFAMILY SBT domain 108 185 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4820g00075 Pral-Chr4820 383647 385464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4820g00075 1 224 SBP-box Gene Family AT5G50670 50.638 9.73e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral4820g00075 SBP 3.8e-31 No_clan