LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4820g00075	ATGGATTGGAATTTGAAGGGTGGCTCGTGGGATATGACTGAATTAGATGGAGGAGGTTTACCCAACATAGAAACAACAACGGCTGATAACTATGACGGGTCAGGCCGATTTGGATTAGTGAACGGAAGTGGAGGCGAATTTTGCGTTGATTTGAAGCTGGGTCAGGTCGGCAATTCTGGAACTGAGTCTTCAGGGCCCAAGTGGAAAGTCGCCGCCGCTGCTGGCGGCGGCGGCGGAGGCGGAGTCCCCAGGACGGCAGCGTCGACTCCTTCAGGATCATCGAAGAGAGCTCGGGCAATTAACAACGGGATCCAAACGGCGTCGTGCCTTGTGGATGGGTGCAGTTCAGATCTCAGTAATTGTAGGGAGTACCATAGGCGTCACAAGGTGTGCGAGCTCCATTCCAAGGCTCCTGTGGTCACCATTGGTGGCCACAAGCAAAGGTTCTGCCAACAGTGTAGCAGGTTTCATTCACTGGAAGAATTTGATGAAGGGAAGAGAAGCTGCAGGAAGCGATTAGATGGGCACAACCGACGGAGAAGAAAGCCCCAGCCAGTGCCTCTCACCCGGTCTGCTACTTTATTCTCGAATTACCACCAAGGGAGGCAGTTAATACCCTTATCATCGGGCTCAAATCTCTATCCTTCAAGTGCTATGGTGAACACTGGTTGGGACTGGGAATGGGATGCTAGGACGACGATGGTTCATCATAATAATAAACACCAGATATTTCTTGGGTCTTCTGAAAGCGCCAGAATTAAGCAGGAAGTGACGACATATCATGAGAAGCCATGTGCCGAAACTGCTTCTGGGTGCCACACAGTTCTGAGGACGACGGTGGTCAGGCCTGCAGGGTCTTTCTCATCGGCGGAGGAGTCTCCTCCTCCGCCTTGTGCTCTCTCTCTTCTGTCATCACCGCCGGCACCCACGTACCTGTCACAGTCTCTTGGCCCCACCACCCTCCATGATCACGGCTTACAACAGGCCGTGGACACCACGCTTCTGGTGAGCAATGGGACTCAGCCTTCAATGTATAACTTGTTAGGGTCTGATGCATCCCAGGGGATCCATACTTCTCAATCACTTCCATTTCAGTGGGAATAA	1104	0.5226	MDWNLKGGSWDMTELDGGGLPNIETTTADNYDGSGRFGLVNGSGGEFCVDLKLGQVGNSGTESSGPKWKVAAAAGGGGGGGVPRTAASTPSGSSKRARAINNGIQTASCLVDGCSSDLSNCREYHRRHKVCELHSKAPVVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPVPLTRSATLFSNYHQGRQLIPLSSGSNLYPSSAMVNTGWDWEWDARTTMVHHNNKHQIFLGSSESARIKQEVTTYHEKPCAETASGCHTVLRTTVVRPAGSFSSAEESPPPPCALSLLSSPPAPTYLSQSLGPTTLHDHGLQQAVDTTLLVSNGTQPSMYNLLGSDASQGIHTSQSLPFQWE	367

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pral4820g00075	367	MobiDBLite	consensus disorder prediction	1	21	-	-
Pral4820g00075	367	FunFam	Squamosa promoter-binding-like protein 14	100	170	-	-
Pral4820g00075	367	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	64	322	IPR044817	GO:0003677
Pral4820g00075	367	Pfam	SBP domain	109	182	IPR004333	GO:0003677
Pral4820g00075	367	MobiDBLite	consensus disorder prediction	74	96	-	-
Pral4820g00075	367	Gene3D	-	100	170	IPR036893	GO:0003677\|GO:0005634
Pral4820g00075	367	ProSiteProfiles	Zinc finger SBP-type profile.	106	183	IPR004333	GO:0003677
Pral4820g00075	367	SUPERFAMILY	SBT domain	108	185	IPR036893	GO:0003677\|GO:0005634

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4820g00075	Pral-Chr4820	383647	385464	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4820g00075	1	224	SBP-box Gene Family	AT5G50670	50.638	9.73e-64	205

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	SBP	Pral4820g00075		SBP	3.8e-31	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4820g00075	-		-	pcin:129320715	475.322

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