Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4820g00045 ATGGGTGCTAGCTCTGGCTTGCCAATGTCACAAACAAGTCTGTCAGGAGAAGTTACAGAAAAGCTGCATGTTGGTGGAGGCGGCATCATTGATGTGTTGAAGTCTACTAAGGAATCAAGGAATCAACACCCCAGATCATGGTCTAACGTGCACATGCAGCCAGAATCTACATCTTATGGTTTAACTGGAAAGAAGATTCTCACTGATACAGCTTCTCATGAGAGCAGCCTATTCTCTAGTTCACTGTCTGAGATATTTAGCCAAAACTTGAGGTTAACTCGGAATGATATTCGTTCTCATCAGCCTGTGACCATTGGTTCATTTCCTGAGGAAGAACCATATAAATCTCTTAAAGAAATTGAGGCGGACACTATTGGGAATCTCCTCCCTGATGAAGATGATCTGTTTTCCGGTGTTACTAATGAGTTAGGATACACTGCCAATGCCAGAACAAATGATGACTTTGAGGAGTTTGATTTGTTTAGTAGCGGCGGAGGCATGGAACTTGAAGGCGATGAACCTCTCAGTTTTGGAAAGAAAATTGGTAGTCTGGATGTAGATTCTAGTTATTTTGGAGGTTTTAAAGGCAAGCTTCCTTTTGGTGAACAACCTTCTAGAACACTTTTTGTTAGAAACATCAATAGCAATGTTGAAGATTCTGAGCTAAAGGCTCTTTTTGAGCAATATGGAGACATCCGCACCATTTATACGTCCTGCAAACATCGTGGCTTTGTGATGATTTCTTACTATGACCTAAGGGCAGCACAAAATGCAATGCAAGCACTCCAGAATAGGTCGTTGAGATCTAGGAAACTTGACATTCATTATTCAATTCCAAAGGGCAATGCTCCTGAGAAGGATATAAGCCATGGCACGCTAGTGCTATCTGGTCTTGATTCTTCTGTTTCAAATGACGAGCTTCAACATATTTTTGGATTTTATGGAGAAATAAAAGAAATCTATGAATCTCCAGAAGTAAATTATAGAAAAATTATTGAATTTTATGATGTGCGAGCTGCAGAAGCCGCTCTCCGTGCATTAAACAGAAGTGACATTGCTGGTAAGCAGATCAAGCTTGAACCTGGCCATCCTCGGGGAACAACATGTCTGACGCAGGAGTCTCACAATGGCCAAGATGAACCTGATTTTGGTCAAAGTCTTTGTGACAACTTGTCACTAAGACAGAGAGCAACAATGTCTTCTGGAGTAATTGCATCTGGCTGCTTAGACAATGGATCTAATCCAGGATTTCGCCCTGCAATGCAGCAACCTATCACTCCGTTAATTGATAATGCTTTCTCTCCTGTGAATTCTAGCATCCACAAATCAGTGAGAGGGCCAACTTCTGGAAAAGTGCCCAGTGTTTGCGAGTCCAGTAACTTCCTTGATGCAATGAAATTTGCCTCTCTTCCAAGATTCCACCCTCATTCCCTCCCTGATTATCATGAAAGTTTTGCTAATGGTAGTGCTTACAATTTTTCAAGCATTGTTGGCAATGTGGCTGGCAATATCGGGACTGCAGTGACAGACAACTCAGATAGCAGGCACAATAAGGGAATAGGTTCACCTGGGAATCTGATGGAATTTACTGGAGCAGGAAATGGGAACCATCAACGTCATGGACTTTATCATGTGTGGAACAACTCCAATTTGCATCAGGAACCTTCACCAAATCCCATGCTTTGGCAGAAAACACCATCATTTGTTAATGGTGCTTGTGCTTCTGGCCTTCCACAAATGCCTGGCTTTCCGAGAACACAGCCTCACATGCTGAGAGCATCACATATGGACCATCATGTTGGGTCAGCTCCTGTTAATGCCTCACCCTGGGACAGGCAGCACTCTTATTTGGGAGTGTCTCCTGAAACTTCTGGTTTTCGTATGGGTTCTCTAGGAAGTGCTGGTGTACCTGGTAGCTGGCAATTGCATCCCCCAGATTTTTCTTCTCACAACATGTTCCCTCATATTGGTGGGAATGGTGCAGAATTGACGCCAACTGCTGGGCAAAACTCTCCTAATCAGTTGTCACATCTTTTCCCTGGGAGACATCCCATGAATTCTATGTCCAAACTTGATTCCAGTGAACGAATGAGGAGTCTGTATCCCCTCCGGAAAAGTGAAGCTAACGCTAATAATGCTGATAAAAAGCAATATGAACTTGACCTAGGCTGCATAATGCGTGGGGAAGACAGTCGAACAACTCTCATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTAGCTGCTATAGATGAGCAATGTCGGGGAACTTATGATTTTCTATATTTGCCAATTGACTTTAAGAACAAATGTAATGTTGGCTACGCATTTATTAATATGATTGATCCTGCTCAGATTATTCCATTCCACCAGGCATTTAATGGGAAAAAATGGGAGAAATTTAATAGTGAAAAGGTAGCCTCACTTGCATATGCCCGAATTCAGGGCAAAGCTGCACTTATTGCTCACTTCCAGAATTCAAGCCTGATGAATGAAGACAAGCGTTGCCGTCCTATTCTGTTCCACACGGATGGCCCAAATGCTGGTGATCCGGAACCCTTCCCCATGGGTACTAGTATTAGAATGAGGCCCGGAAAATCTCGCGGCAGTAGCAATAATGAGGAGAATCGCAGCCAGGGGAGTCCTTCAACTTTGGCAGGTGGAGAGGGACCTACTACTAATGGAATAGATTCTTCATTGAGCTCTTCAAAGAATTCTGACTGA 2733 0.4292 MGASSGLPMSQTSLSGEVTEKLHVGGGGIIDVLKSTKESRNQHPRSWSNVHMQPESTSYGLTGKKILTDTASHESSLFSSSLSEIFSQNLRLTRNDIRSHQPVTIGSFPEEEPYKSLKEIEADTIGNLLPDEDDLFSGVTNELGYTANARTNDDFEEFDLFSSGGGMELEGDEPLSFGKKIGSLDVDSSYFGGFKGKLPFGEQPSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTSCKHRGFVMISYYDLRAAQNAMQALQNRSLRSRKLDIHYSIPKGNAPEKDISHGTLVLSGLDSSVSNDELQHIFGFYGEIKEIYESPEVNYRKIIEFYDVRAAEAALRALNRSDIAGKQIKLEPGHPRGTTCLTQESHNGQDEPDFGQSLCDNLSLRQRATMSSGVIASGCLDNGSNPGFRPAMQQPITPLIDNAFSPVNSSIHKSVRGPTSGKVPSVCESSNFLDAMKFASLPRFHPHSLPDYHESFANGSAYNFSSIVGNVAGNIGTAVTDNSDSRHNKGIGSPGNLMEFTGAGNGNHQRHGLYHVWNNSNLHQEPSPNPMLWQKTPSFVNGACASGLPQMPGFPRTQPHMLRASHMDHHVGSAPVNASPWDRQHSYLGVSPETSGFRMGSLGSAGVPGSWQLHPPDFSSHNMFPHIGGNGAELTPTAGQNSPNQLSHLFPGRHPMNSMSKLDSSERMRSLYPLRKSEANANNADKKQYELDLGCIMRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPAQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTSIRMRPGKSRGSSNNEENRSQGSPSTLAGGEGPTTNGIDSSLSSSKNSD 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4820g00045 910 FunFam MEI2-like protein 5 isoform 2 195 289 - -
Pral4820g00045 910 CDD RRM3_MEI2_like 735 820 IPR034454 -
Pral4820g00045 910 Gene3D - 290 383 IPR012677 -
Pral4820g00045 910 MobiDBLite consensus disorder prediction 1 20 - -
Pral4820g00045 910 CDD RRM1_MEI2_like 205 280 IPR034453 -
Pral4820g00045 910 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 358 IPR000504 GO:0003723
Pral4820g00045 910 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 272 IPR000504 GO:0003723
Pral4820g00045 910 MobiDBLite consensus disorder prediction 843 910 - -
Pral4820g00045 910 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 364 IPR000504 GO:0003723
Pral4820g00045 910 PANTHER RNA RECOGNITION MOTIF-CONTAINING 53 880 - -
Pral4820g00045 910 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 279 IPR000504 GO:0003723
Pral4820g00045 910 MobiDBLite consensus disorder prediction 867 910 - -
Pral4820g00045 910 SMART rrm1_1 292 360 IPR000504 GO:0003723
Pral4820g00045 910 SMART rrm1_1 207 275 IPR000504 GO:0003723
Pral4820g00045 910 SMART rrm1_1 734 810 IPR000504 GO:0003723
Pral4820g00045 910 Gene3D - 200 289 IPR012677 -
Pral4820g00045 910 SUPERFAMILY RNA-binding domain, RBD 203 365 IPR035979 GO:0003676
Pral4820g00045 910 MobiDBLite consensus disorder prediction 1 18 - -
Pral4820g00045 910 Pfam RNA recognition motif 2 732 828 IPR007201 -
Pral4820g00045 910 SUPERFAMILY RNA-binding domain, RBD 734 819 IPR035979 GO:0003676
Pral4820g00045 910 FunFam Protein MEI2-like 1 290 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4820g00045 Pral-Chr4820 241734 249624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4820g00045 201 357 Eukaryotic Initiation Factors Gene Family AT3G16380 25.843 9.59e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4820g00045 - - aprc:113865455 1272.3