Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4820g00040 ATGCATTTCGCTAAACTCGATGATTCGCCAATGTTCAGGCAACAGCTGCAGTGCCTGGAAGAAGGTGTAGATTCATTACGGGCGAGATGCCAGAAGTTCTACAAAGGATGTCGGAAGTACACGGAAGGTCTTGGTGAGGGATATGATGGGGACATTGCTTTTGCGAGTGCCCTTGAAACTTTTGGGGGAGGGCATGGTGATCCTCTTTTTGTTGCTTTGGGAGGACCTGTTATGACCAAATTCACTATTGCTTTGAGAGAAATTGGTACCTACAAAGAAGTTCTACGGTCACAGGTGGAGCACATGCTTAATGACCGGTTGTTACACATTCTCAATGTTGACATCCAAGATGTTAAGGAAGCTCGAAAGCGGTTTGACAAAGCTTCCCTTGCATATGATCAGGCACGTGATAAGTTTCTGTCATTGAGAAAGAGCACTAGAATGGATGTTGCTGCTGCCATCGAAGAGGAATGGCACAGTGCAAGAGATTCATTTGAGGAAGCTCGTTGCAATCTGGTTAGTGCTCTAAATAATGTTGAGGCCAAGAAGAGATTTGAATTTTTAGAGGCCGTCAGTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGATATCAGCTATTGCATCAGATGGAACCTTTCATTACTGAGGTCTTGGCTTATGCACAGCAGTCAAGAGAAAGTTACAATACGGATCAGATCTCACTAAATGAAAAAATGCAAGAGTACAAAAAACAAATTCACCAAGAAAGTAGATTGTCTTTAAATGGCCCCCATGGTTCTCCTGGAGAATGTGTACAGCCTTTTTCTAAGATATCAAATGAAGTGGTAGATGCAGTAAAAGAATCTGCTGCAAATGGGAAGGTTCAAATTATTCGACAAGGATTTCTTTCAAAACGCTCCTCCAATCTGAGGGGTGACTGGAAGAGGAGGTATTTTGTCCTTGATAGCCGAGGAATGCTGTTCTATTATCGCAAACCATGGAACTTGGCGCATAGTAGCAATCCACCATCTGTTCAGAGAAATAATGCCAATGAAAATGGGTCTGGACTTCTGAGCCGGTGGCTTTCTTCTCATTATCATGGGGGTGTCCATGATGAGCGAGCTGTGGCACGTCATGCAGTGAACCTGCTTACGTCAACAATTAAGGTTGATGCTGATCAGTCAGATTTAAGATTTTGCTTCCGGATTATTTCACCAGTAAAGAACTATACATTGCAGGCAGAAAATGCAGTTGACCAAATGGATTGGATAGAAAAAATGACTGGAGTAATTGCTTCCTTGTTGAGTGTTCAGTCAGTAGAAATGCCTCTCACAGCTGACTCTGAAAGCGGTGGATGTTCCTCTTCAAGCAAGAGTGATACGCTGGAAAACTTTCGAGATGATATTCAACCAATGAGTAAGGAGTGTGCGTCCAAGAACATCACTTCTACTGGTCATTTGCGTGAATATAAAAGTTTTCAGTTGCATAAACAGAGTACAAGAGGTGAAAAACCAATTGATGTTCTCAGAAGTGTAAGTGGGAATGACAAATGTGCTGATTGTGGTAAACCTGAACCAGAATGGGCATCCTTAAACCTTGGTATTCTCATATGCATCGAGTGTTCTGGCATTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACACTTGATGTGAAAGTTTGGGACCCTTCCGTTCTAACTATGTTTCAGTCCCTAGGCAATCATTTTGCAAACTCAGTTTGGGAAGAGAAGTTGCATTCAGCAAGTGAAATGCAAGCTGATGGCAATACTATTGACGACAGAAACAAATTACTCCGTGCAAGGAAACCAGAACATGACGATCCTATTTCATTAAAAGAGAGGTTCATTCATGCAAAGTATTCTGAGAAAATCTTTGTCGATCAGATAAAGAATAACAACCATCTCCTTTCGGTGGCACAACAGTTGTGGGAAAGTGTCTGTGCCAATGACAAGAAAGCAGCATACCGGCATATTGTGAAGTCTGATTTGGATGTCAATGCCGTCTGTGGTCAAGAATATTTTGATGATGCTTTTGACATGCCTTCTTCAAGCAATTCAAAATCTTCAGCCAGGAGCGAAAATCAGCCATTAGAGGACATACTTGATGGTTCAACTGTGCTTCATCTGGCATGCCTGACTGCTGACATTGCCATGGTGGAGCTGCTCTTACAATATGGCGCAGACATAAATGCTTCCGATTCAAGAGGTCGCACCCCACTGCATTACTGTATTATCAGAGGGAAGAATGCAACTGCCAAATTGCTTCTTATGAGAGGGGCCAATCCACATGCCGCAGACGATGAAGGCAATACTCCTCTTAAACTTGCGTCAGAATCCGCTTCTATTAGCGACGATGTTCTCGGCCTCATTACAAGAAGATGA 2400 0.4254 MHFAKLDDSPMFRQQLQCLEEGVDSLRARCQKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHGDPLFVALGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLHILNVDIQDVKEARKRFDKASLAYDQARDKFLSLRKSTRMDVAAAIEEEWHSARDSFEEARCNLVSALNNVEAKKRFEFLEAVSGIMDAHLRYFQQGYQLLHQMEPFITEVLAYAQQSRESYNTDQISLNEKMQEYKKQIHQESRLSLNGPHGSPGECVQPFSKISNEVVDAVKESAANGKVQIIRQGFLSKRSSNLRGDWKRRYFVLDSRGMLFYYRKPWNLAHSSNPPSVQRNNANENGSGLLSRWLSSHYHGGVHDERAVARHAVNLLTSTIKVDADQSDLRFCFRIISPVKNYTLQAENAVDQMDWIEKMTGVIASLLSVQSVEMPLTADSESGGCSSSSKSDTLENFRDDIQPMSKECASKNITSTGHLREYKSFQLHKQSTRGEKPIDVLRSVSGNDKCADCGKPEPEWASLNLGILICIECSGIHRNLGVHISKVRSLTLDVKVWDPSVLTMFQSLGNHFANSVWEEKLHSASEMQADGNTIDDRNKLLRARKPEHDDPISLKERFIHAKYSEKIFVDQIKNNNHLLSVAQQLWESVCANDKKAAYRHIVKSDLDVNAVCGQEYFDDAFDMPSSSNSKSSARSENQPLEDILDGSTVLHLACLTADIAMVELLLQYGADINASDSRGRTPLHYCIIRGKNATAKLLLMRGANPHAADDEGNTPLKLASESASISDDVLGLITRR 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4820g00040 799 PRINTS HIV Rev interacting protein signature 552 573 IPR001164 GO:0005096
Pral4820g00040 799 PRINTS HIV Rev interacting protein signature 510 529 IPR001164 GO:0005096
Pral4820g00040 799 PRINTS HIV Rev interacting protein signature 529 546 IPR001164 GO:0005096
Pral4820g00040 799 SMART arf_gap_3 498 639 IPR001164 GO:0005096
Pral4820g00040 799 CDD BAR_SFC_plant 15 215 IPR035670 -
Pral4820g00040 799 Gene3D Arf GTPase activating protein 480 640 IPR038508 -
Pral4820g00040 799 ProSiteProfiles Ankyrin repeat profile. 741 773 IPR002110 GO:0005515
Pral4820g00040 799 SUPERFAMILY ArfGap/RecO-like zinc finger 498 633 IPR037278 -
Pral4820g00040 799 SUPERFAMILY BAR/IMD domain-like 6 314 IPR027267 -
Pral4820g00040 799 SUPERFAMILY Ankyrin repeat 707 785 IPR036770 -
Pral4820g00040 799 ProSiteProfiles ARF GTPase-activating proteins domain profile. 498 639 IPR001164 GO:0005096
Pral4820g00040 799 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
Pral4820g00040 799 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Pral4820g00040 799 ProSiteProfiles Ankyrin repeat region circular profile. 741 773 - -
Pral4820g00040 799 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 481 640 - -
Pral4820g00040 799 SUPERFAMILY PH domain-like 292 450 - -
Pral4820g00040 799 ProSiteProfiles PH domain profile. 291 427 IPR001849 -
Pral4820g00040 799 ProSiteProfiles Ankyrin repeat profile. 708 740 IPR002110 GO:0005515
Pral4820g00040 799 Gene3D - 645 797 IPR036770 -
Pral4820g00040 799 SMART ANK_2a 741 770 IPR002110 GO:0005515
Pral4820g00040 799 SMART ANK_2a 708 737 IPR002110 GO:0005515
Pral4820g00040 799 Gene3D - 284 437 IPR011993 -
Pral4820g00040 799 CDD ArfGap 501 626 - -
Pral4820g00040 799 Pfam Ankyrin repeats (3 copies) 713 795 IPR002110 GO:0005515
Pral4820g00040 799 CDD PH_ACAP 294 431 - -
Pral4820g00040 799 Pfam PH domain 293 423 IPR001849 -
Pral4820g00040 799 Coils Coil 227 247 - -
Pral4820g00040 799 Pfam Putative GTPase activating protein for Arf 501 633 IPR001164 GO:0005096
Pral4820g00040 799 SMART 5bar 2 218 IPR004148 GO:0005515|GO:0005737
Pral4820g00040 799 ProSiteProfiles Ankyrin repeat region circular profile. 708 739 - -
Pral4820g00040 799 Coils Coil 118 138 - -
Pral4820g00040 799 SMART PH_update 292 429 IPR001849 -
Pral4820g00040 799 PANTHER CENTAURIN/ARF 3 794 IPR045258 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4820g00040 Pral-Chr4820 203282 213754 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4820g00040 497 639 C2H2 Transcription Factor Family AT4G21160 37.580 2.90e-21 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4820g00040 K12489 - qsa:O6P43_030661 1144.8