Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4820g00039 ATGCATTTCGCTAAACTCGATGATTCGCCAATGTTCAGGCAACAGCTGCAGTGCCTGGAAGAAGGTGTAGATTCATTACGGGCGAGATGCCAGAAGTTCTACAAAGGATGTCGGAAGTACACGGAAGGTCTTGGTGAGGGATATGATGGGGACATTGCTTTTGCGAGTGCCCTTGAAACTTTTGGGGGAGGGCATGGTGATCCTCTTTTTGTTGCTTTGGGAGGACCTGTTATGACCAAATTCACTATTGCTTTGAGAGAAATTGGTACCTACAAAGAAGTTCTACGGTCACAGGTGGAGCACATGCTTAATGACCGGTTGTTACACATTCTCAATGTTGACATCCAAGATGTTAAGGAAGCTCGAAAGCGGTTTGACAAAGCTTCCCTTGCATATGATCAGGCACGTGATAAGTTTCTGTCATTGAGAAAGAGCACTAGAATGGATGTTGCTGCTGCCATCGAAGAGGAATGGCACAGTGCAAGAGATTCATTTGAGGAAGCTCGTTGCAATCTGGTTAGTGCTCTAAATAATGTTGAGGCCAAGAAGAGATTTGAATTTTTAGAGGCCGTCAGTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGATATCAGCTATTGCATCAGATGGAACCTTTCATTACTGAGGTCTTGGCTTATGCACAGCAGTCAAGAGAAAGTTACAATACGGATCAGATCTCACTAAATGAAAAAATGCAAGAGTACAAAAAACAAATTCACCAAGAAAGTAGATTGTCTTTAAATGGCCCCCATGGTTCTCCTGGAGAATGTGTACAGCCTTTTTCTAAGATATCAAATGAAGTGGTAGATGCAGTAAAAGAATCTGCTGCAAATGGGAAGGTTCAAATTATTCGACAAGGATTTCTTTCAAAACGCTCCTCCAATCTGAGGGGTGACTGGAAGAGGAGGTATTTTGTCCTTGATAGCCGAGGAATGCTGTTCTATTATCGCAAACCATGGAACTTGGCGCATAGTAGCAATCCACCATCTGTTCAGAGAAATAATGCCAATGAAAATGGGTCTGGACTTCTGAGCCGGTGGCTTTCTTCTCATTATCATGGGGGTGTCCATGATGAGCGAGCTGTGGCACGTCATGCAGTGAACCTGCTTACGTCAACAATTAAGGTTGATGCTGATCAGTCAGATTTAAGATTTTGCTTCCGGATTATTTCACCAGTAAAGAACTATACATTGCAGGCAGAAAATGCAGTTGACCAAATGGATTGGATAGAAAAAATGACTGGAGTAATTGCTTCCTTGTTGAGTGTTCAGTCAGTAGAAATGCCTCTCACAGCTGACTCTGAAAGCGGTGGATGTTCCTCTTCAAGCAAGAGTGATACGCTGGAAAACTTTCGAGATGATATTCAACCAATGAGTAAGGAGTGTGCGTCCAAGAACATCACTTCTACTGGTCATTTGCGTGAATATAAAAGTTTTCAGTTGCATAAACAGAGTACAAGAGGTGAAAAACCAATTGATGTTCTCAGAAGTGTAAGTGGGAATGACAAATGTGCTGATTGTGGTAAACCTGAACCAGAATGGGCATCCTTAAACCTTGGTATTCTCATATGCATCGAGTGTTCTGGCATTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACACTTGATGTGAAAGTTTGGGACCCTTCCGTTCTAACTATGTTTCAGTCCCTAGGCAATCATTTTGCAAACTCAGTTTGGGAAGAGAAGTTGCATTCAGCAAGTGAAATGCAAGCTGATGGCAATACTATTGACGACAGAAACAAATTACTCCGTGCAAGGAAACCAGAACATGACGATCCTATTTCATTAAAAGAGAGGTTCATTCATGCAAAGATAAAGAATAACAACCATCTCCTTTCGGTGGCACAACAGTTGTGGGAAAGTGTCTGTGCCAATGACAAGAAAGCAGCATACCGGCATATTGTGAAGTCTGATTTGGATGTCAATGCCGTCTGTGGTCAAGAATATTTTGATGATGCTTTTGACATGCCTTCTTCAAGCAATTCAAAATCTTCAGCCAGGAGCGAAAATCAGCCATTAGAGGACATACTTGATGGTTCAACTGTGCTTCATCTGGCATGCCTGACTGCTGACATTGCCATGGTGGAGCTGCTCTTACAATATGGCGCAGACATAAATGCTTCCGATTCAAGAGGTCGCACCCCACTGCATTACTGTATTATCAGAGGGAAGAATGCAACTGCCAAATTGCTTCTTATGAGAGGGGCCAATCCACATGCCGCAGACGATGAAGGCAATACTCCTCTTAAACTTGCGTCAGAATCCGCTTCTATTAGCGACGATGTTCTCGGCCTCATTACAAGAAGATGA 2373 0.4265 MHFAKLDDSPMFRQQLQCLEEGVDSLRARCQKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHGDPLFVALGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLHILNVDIQDVKEARKRFDKASLAYDQARDKFLSLRKSTRMDVAAAIEEEWHSARDSFEEARCNLVSALNNVEAKKRFEFLEAVSGIMDAHLRYFQQGYQLLHQMEPFITEVLAYAQQSRESYNTDQISLNEKMQEYKKQIHQESRLSLNGPHGSPGECVQPFSKISNEVVDAVKESAANGKVQIIRQGFLSKRSSNLRGDWKRRYFVLDSRGMLFYYRKPWNLAHSSNPPSVQRNNANENGSGLLSRWLSSHYHGGVHDERAVARHAVNLLTSTIKVDADQSDLRFCFRIISPVKNYTLQAENAVDQMDWIEKMTGVIASLLSVQSVEMPLTADSESGGCSSSSKSDTLENFRDDIQPMSKECASKNITSTGHLREYKSFQLHKQSTRGEKPIDVLRSVSGNDKCADCGKPEPEWASLNLGILICIECSGIHRNLGVHISKVRSLTLDVKVWDPSVLTMFQSLGNHFANSVWEEKLHSASEMQADGNTIDDRNKLLRARKPEHDDPISLKERFIHAKIKNNNHLLSVAQQLWESVCANDKKAAYRHIVKSDLDVNAVCGQEYFDDAFDMPSSSNSKSSARSENQPLEDILDGSTVLHLACLTADIAMVELLLQYGADINASDSRGRTPLHYCIIRGKNATAKLLLMRGANPHAADDEGNTPLKLASESASISDDVLGLITRR 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4820g00039 790 ProSiteProfiles Ankyrin repeat profile. 699 731 IPR002110 GO:0005515
Pral4820g00039 790 ProSiteProfiles ARF GTPase-activating proteins domain profile. 498 627 IPR001164 GO:0005096
Pral4820g00039 790 Pfam PH domain 293 423 IPR001849 -
Pral4820g00039 790 CDD BAR_SFC_plant 15 215 IPR035670 -
Pral4820g00039 790 PRINTS HIV Rev interacting protein signature 529 546 IPR001164 GO:0005096
Pral4820g00039 790 PRINTS HIV Rev interacting protein signature 552 573 IPR001164 GO:0005096
Pral4820g00039 790 PRINTS HIV Rev interacting protein signature 510 529 IPR001164 GO:0005096
Pral4820g00039 790 Gene3D - 284 437 IPR011993 -
Pral4820g00039 790 SMART ANK_2a 699 728 IPR002110 GO:0005515
Pral4820g00039 790 SMART ANK_2a 732 761 IPR002110 GO:0005515
Pral4820g00039 790 ProSiteProfiles Ankyrin repeat region circular profile. 732 764 - -
Pral4820g00039 790 SUPERFAMILY ArfGap/RecO-like zinc finger 498 625 IPR037278 -
Pral4820g00039 790 SMART arf_gap_3 498 621 IPR001164 GO:0005096
Pral4820g00039 790 PANTHER CENTAURIN/ARF 3 786 IPR045258 GO:0005096
Pral4820g00039 790 SUPERFAMILY Ankyrin repeat 657 776 IPR036770 -
Pral4820g00039 790 Pfam Putative GTPase activating protein for Arf 501 600 IPR001164 GO:0005096
Pral4820g00039 790 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
Pral4820g00039 790 ProSiteProfiles PH domain profile. 291 427 IPR001849 -
Pral4820g00039 790 Pfam Ankyrin repeats (3 copies) 704 786 IPR002110 GO:0005515
Pral4820g00039 790 Gene3D Arf GTPase activating protein 480 636 IPR038508 -
Pral4820g00039 790 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Pral4820g00039 790 CDD PH_ACAP 294 431 - -
Pral4820g00039 790 Coils Coil 227 247 - -
Pral4820g00039 790 Gene3D - 637 788 IPR036770 -
Pral4820g00039 790 SUPERFAMILY PH domain-like 292 450 - -
Pral4820g00039 790 ProSiteProfiles Ankyrin repeat region circular profile. 699 730 - -
Pral4820g00039 790 ProSiteProfiles Ankyrin repeat profile. 732 764 IPR002110 GO:0005515
Pral4820g00039 790 SMART 5bar 2 218 IPR004148 GO:0005515|GO:0005737
Pral4820g00039 790 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 481 638 - -
Pral4820g00039 790 CDD ArfGap 501 625 - -
Pral4820g00039 790 Coils Coil 118 138 - -
Pral4820g00039 790 SMART PH_update 292 429 IPR001849 -
Pral4820g00039 790 SUPERFAMILY BAR/IMD domain-like 6 314 IPR027267 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4820g00039 Pral-Chr4820 203282 213756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4820g00039 497 613 C2H2 Transcription Factor Family AT4G21160 43.220 3.02e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4820g00039 K12489 - qsa:O6P43_030661 1127.08