Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4820g00037 ATGCCTGTGTACAATCTTCCATCGAAAATCCTTTGTCGAGTGGTCAACGTCCTGTTGAAGGCGGAGCCGGACACCGATGAGGTGTTTGCCCAGGTAACCTTGCTTCCGGAGCCAAATCAAGATGAAAACGCCGTGGAGAAAGAGGCTCCGCCTCCTCCACCACCACGATTTCAGGTGCATTCCTTCTGCAAAACTCTGACGGCCTCTGATACGAGTACTCATGGTGGATTTTCAGTGCTGAGACGTCATGCCGATGAATGCCTTCCTCCGCTGGATATGTCGAAGCAGCCACCTAACCAGGAGTTGGTGGCGAAGGATCTACACGGTAACGAGTGGAGATTCAGGCATATTTTTAGAGGTTATCCACGTAGACATTTACTGCAAAGTGGTTGGAGTATTTTTGTTAGCTCTAAGAGGCTTCTTGCTGGTGATGCATTTATATTTTTGAGGGGTGAGAATGGGGAACTTCGTGTTGGTGTAAGGCGTGCAATGAGACAGCAGGGTAATGTTCCGTCCTCAGTGATCTCTTGTCACAGCATGCATCTTGGTGTCCTTGCAACTGCCTGGCATGCGGTTACGACTGGGACCATGTTCACTGTGTATTACAAGCCCAGGACCAGTCCTGCTGGATTTATTGTTCCATATGATCAGTATATGGAGTCTCTGAAAAATAATTATACAATAGGAATGCGGTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCAGAGCAGAGGTTTACTGGTACTGTTATTGGACTTGAAGATGCTGATCCACAAAGGTGGCCAAAATCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACGTCTAGCATTCCTCGTCCTGAGAGAGTTTCCCCTTGGAAAATAGAGCCTGCTCATGCTCCTCCAGCTCTAAATCCTCTTACACTGACCAGGCCTAAAAGGCCTCGCTCTAATGCGGTTCCATTATCACCTGATTCCTCGGTTCTTAATCGTGAAGTGTCATCTAAGGTAAGTATGGACCCTTTGCCGGCTAGTGGATTTCCAAGGGTATTGCAAGGTCAAGAATTCTCGACATTGAGACGCAATTTGGCGGAAAGCAATGAATCTGATGCTGCGGGAAAACCTGATGAAAAAAATGATGCAATGTCTATTTCAAGTACGTTTGCTCCAGAGAGCTGGACATCAATAGGGAGGCATGAGCCTACATATTCAGATTTGCTTTCAGGCTTTGGGACGAGTAGAGATCGAACTCGTCTATCCTTGGTACATCAAACTAGCCCTGTGGCTGGTCCTGGAAGAAAACATGTATTAGGTCACGAAGGGAAGTTTAATGTGGTAGCCTGCCCAAGGTCTATAATGCCTTCTAGTATATCATTAAACCTCTCAGACCCTAACATGAAAGGTTCTGCACAAGACAGTGATGTAACTCACCATTCTAGGCGGAATGTGGGGTATGATGCATTTGGAGGTTACCCCGTGTTTCATGGTCACAAAGAAGAGCGTAGTCATGGAAGCTTGTTGATGCCCCCACCTCCACCTCCAACTCAGCATGATAGTCCTGATTCAAGAGACCTCATGCAAAAACCAATGCCAGCAAGATCATTTGAGACTGTTAAAGCTAAAGAAGGGGACTGTAAGCTATTTGGCATCTCACTTATCAGCAGCCCAAGTACACCAGAGCCTTCAAAAATAAATGTGGCATGCAAACCGGCTAGTCACAAGCATCTCACGTCACAACGGCCTTGTACCAAAGAAAGTGATTTGAAATCAGAACAACCAAGTGGATCAAAGCTGCCAGATGCTGCAGTTGACACTGATGACCATGAAAAGCCATCACAAACATTTCAGCCACGTGTGAAAGGTGTTCAAGCCAAACCACGCAGTGATTCTGCTAGGAGTTGCACTAAAGTTCACAAGAAGGGGATTGCGCTTGGTAGGTCAGTTGACCTTACAAAGTTCAGCAACTATGATGAGCTAATTGTTGAATTAGATGAACTGTTTGAATTTGGAGGGGAATTAAGGTCTTTGAAAAAGGATTGGCTTATTGTCTACACCGACAATGAGGGTGACATGATGCTTGTGGGGGATGATCCGTGGCCGGAGTTTTGTGCCATGGTTCGTAAAATATGTATCTACCCCAAAGAGGAAATTCAGAAAATGAACCCGGGAACAATAAGGTTTGGGGGTGAGGAGAGTCTGTCGGCTAGCGAAGGCATGGATGCTAAAGAAGTATAA 2220 0.4608 MPVYNLPSKILCRVVNVLLKAEPDTDEVFAQVTLLPEPNQDENAVEKEAPPPPPPRFQVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPNQELVAKDLHGNEWRFRHIFRGYPRRHLLQSGWSIFVSSKRLLAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISCHSMHLGVLATAWHAVTTGTMFTVYYKPRTSPAGFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTVIGLEDADPQRWPKSKWRCLKVRWDETSSIPRPERVSPWKIEPAHAPPALNPLTLTRPKRPRSNAVPLSPDSSVLNREVSSKVSMDPLPASGFPRVLQGQEFSTLRRNLAESNESDAAGKPDEKNDAMSISSTFAPESWTSIGRHEPTYSDLLSGFGTSRDRTRLSLVHQTSPVAGPGRKHVLGHEGKFNVVACPRSIMPSSISLNLSDPNMKGSAQDSDVTHHSRRNVGYDAFGGYPVFHGHKEERSHGSLLMPPPPPPTQHDSPDSRDLMQKPMPARSFETVKAKEGDCKLFGISLISSPSTPEPSKINVACKPASHKHLTSQRPCTKESDLKSEQPSGSKLPDAAVDTDDHEKPSQTFQPRVKGVQAKPRSDSARSCTKVHKKGIALGRSVDLTKFSNYDELIVELDELFEFGGELRSLKKDWLIVYTDNEGDMMLVGDDPWPEFCAMVRKICIYPKEEIQKMNPGTIRFGGEESLSASEGMDAKEV 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4820g00037 739 MobiDBLite consensus disorder prediction 359 378 - -
Pral4820g00037 739 MobiDBLite consensus disorder prediction 565 626 - -
Pral4820g00037 739 FunFam Auxin response factor 225 297 - -
Pral4820g00037 739 MobiDBLite consensus disorder prediction 289 327 - -
Pral4820g00037 739 ProSiteProfiles B3 DNA-binding domain profile. 62 164 IPR003340 GO:0003677
Pral4820g00037 739 Pfam Auxin response factor 188 270 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral4820g00037 739 Gene3D - 622 716 - -
Pral4820g00037 739 FunFam Auxin response factor 60 164 - -
Pral4820g00037 739 MobiDBLite consensus disorder prediction 495 522 - -
Pral4820g00037 739 SUPERFAMILY DNA-binding pseudobarrel domain 59 191 IPR015300 -
Pral4820g00037 739 Gene3D - 59 164 IPR015300 -
Pral4820g00037 739 Pfam B3 DNA binding domain 62 163 IPR003340 GO:0003677
Pral4820g00037 739 SUPERFAMILY CAD & PB1 domains 629 704 - -
Pral4820g00037 739 FunFam Auxin response factor 622 716 - -
Pral4820g00037 739 Pfam AUX/IAA family 673 711 IPR033389 -
Pral4820g00037 739 ProSiteProfiles PB1 domain profile. 627 720 IPR000270 GO:0005515
Pral4820g00037 739 SMART B3_2 62 164 IPR003340 GO:0003677
Pral4820g00037 739 CDD B3_DNA 60 162 IPR003340 GO:0003677
Pral4820g00037 739 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 716 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral4820g00037 739 Gene3D - 225 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4820g00037 Pral-Chr4820 185469 189986 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4820g00037 1 739 B3 DNA Binding Superfamily AT5G62000 62.024 0.0 910
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral4820g00037 B3 1.4e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4820g00037 - - aip:107612759 1065.45