Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4820g00036 ATGGGATCATCAGCATCAGAGGTATCGATCAAGGGAAATCGCATGGACGGGACGGGGCGAAGCCGCTCCTCTGTTTACAATAACTATAACGAGGCTTGGAATCCTACAGGGTGTCAGAATGCCCACTCATCGTCAACTGTCAGAGACTCGGAAGCAGCGCTTTACAAGGAGCTATGGCATGCTTGTGCTGGTCCCCTGGTTACATTGCCCCGTGAACGGGAACGGGTCTTCTATTTTCCTCAGGGACATATTGAGCAAGTGGAGGCGTCCACAAATCAGGTGGCGGACCAGCAGATGCCTGTGTACAATCTTCCATCGAAAATCCTTTGTCGAGTGGTCAACGTCCTGTTGAAGGCGGAGCCGGACACCGATGAGGTGTTTGCCCAGGTAACCTTGCTTCCGGAGCCAAATCAAGATGAAAACGCCGTGGAGAAAGAGGCTCCGCCTCCTCCACCACCACGATTTCAGGTGCATTCCTTCTGCAAAACTCTGACGGCCTCTGATACGAGTACTCATGGTGGATTTTCAGTGCTGAGACGTCATGCCGATGAATGCCTTCCTCCGCTGGATATGTCGAAGCAGCCACCTAACCAGGAGTTGGTGGCGAAGGATCTACACGGTAACGAGTGGAGATTCAGGCATATTTTTAGAGGTTATCCACGTAGACATTTACTGCAAAGTGGTTGGAGTATTTTTGTTAGCTCTAAGAGGCTTCTTGCTGGTGATGCATTTATATTTTTGAGGGGTGAGAATGGGGAACTTCGTGTTGGTGTAAGGCGTGCAATGAGACAGCAGGGTAATGTTCCGTCCTCAGTGATCTCTTGTCACAGCATGCATCTTGGTGTCCTTGCAACTGCCTGGCATGCGGTTACGACTGGGACCATGTTCACTGTGTATTACAAGCCCAGGACCAGTCCTGCTGGATTTATTGTTCCATATGATCAGTATATGGAGTCTCTGAAAAATAATTATACAATAGGAATGCGGTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCAGAGCAGAGGTTTACTGGTACTGTTATTGGACTTGAAGATGCTGATCCACAAAGGTGGCCAAAATCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACGTCTAGCATTCCTCGTCCTGAGAGAGTTTCCCCTTGGAAAATAGAGCCTGCTCATGCTCCTCCAGCTCTAAATCCTCTTACACTGACCAGGCCTAAAAGGCCTCGCTCTAATGCGGTTCCATTATCACCTGATTCCTCGGTTCTTAATCGTGAAGTGTCATCTAAGGTAAGTATGGACCCTTTGCCGGCTAGTGGATTTCCAAGGGTATTGCAAGGTCAAGAATTCTCGACATTGAGACGCAATTTGGCGGAAAGCAATGAATCTGATGCTGCGGGAAAACCTGATGAAAAAAATGATGCAATGTCTATTTCAAGTACGTTTGCTCCAGAGAGCTGGACATCAATAGGGAGGCATGAGCCTACATATTCAGATTTGCTTTCAGGCTTTGGGACGAGTAGAGATCGAACTCGTCTATCCTTGGTACATCAAACTAGCCCTGTGGCTGGTCCTGGAAGAAAACATGTATTAGGTCACGAAGGGAAGTTTAATGTGGTAGCCTGCCCAAGGTCTATAATGCCTTCTAGTATATCATTAAACCTCTCAGACCCTAACATGAAAGGTTCTGCACAAGACAGTGATGTAACTCACCATTCTAGGCGGAATGTGGGGTATGATGCATTTGGAGGTTACCCCGTGTTTCATGGTCACAAAGAAGAGCGTAGTCATGGAAGCTTGTTGATGCCCCCACCTCCACCTCCAACTCAGCATGATAGTCCTGATTCAAGAGACCTCATGCAAAAACCAATGCCAGCAAGATCATTTGAGACTGTTAAAGCTAAAGAAGGGGACTGTAAGCTATTTGGCATCTCACTTATCAGCAGCCCAAGTACACCAGAGCCTTCAAAAATAAATGTGGCATGCAAACCGGCTAGTCACAAGCATCTCACGTCACAACGGCCTTGTACCAAAGAAAGTGATTTGAAATCAGAACAACCAAGTGGATCAAAGCTGCCAGATGCTGCAGTTGACACTGATGACCATGAAAAGCCATCACAAACATTTCAGCCACGTGTGAAAGGTGTTCAAGCCAAACCACGCAGTGATTCTGCTAGGAGTTGCACTAAAGTTCACAAGAAGGGGATTGCGCTTGGTAGGTCAGTTGACCTTACAAAGTTCAGCAACTATGATGAGCTAATTGTTGAATTAGATGAACTGTTTGAATTTGGAGGGGAATTAAGGTCTTTGAAAAAGGATTGGCTTATTGTCTACACCGACAATGAGGGTGACATGATGCTTGTGGGGGATGATCCGTGGCCGGAGTTTTGTGCCATGGTTCGTAAAATATGTATCTACCCCAAAGAGGAAATTCAGAAAATGAACCCGGGAACAATAAGGTTTGGGGGTGAGGAGAGTCTGTCGGCTAGCGAAGGCATGGATGCTAAAGAAGTATAA 2514 0.469 MGSSASEVSIKGNRMDGTGRSRSSVYNNYNEAWNPTGCQNAHSSSTVRDSEAALYKELWHACAGPLVTLPRERERVFYFPQGHIEQVEASTNQVADQQMPVYNLPSKILCRVVNVLLKAEPDTDEVFAQVTLLPEPNQDENAVEKEAPPPPPPRFQVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPNQELVAKDLHGNEWRFRHIFRGYPRRHLLQSGWSIFVSSKRLLAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISCHSMHLGVLATAWHAVTTGTMFTVYYKPRTSPAGFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTVIGLEDADPQRWPKSKWRCLKVRWDETSSIPRPERVSPWKIEPAHAPPALNPLTLTRPKRPRSNAVPLSPDSSVLNREVSSKVSMDPLPASGFPRVLQGQEFSTLRRNLAESNESDAAGKPDEKNDAMSISSTFAPESWTSIGRHEPTYSDLLSGFGTSRDRTRLSLVHQTSPVAGPGRKHVLGHEGKFNVVACPRSIMPSSISLNLSDPNMKGSAQDSDVTHHSRRNVGYDAFGGYPVFHGHKEERSHGSLLMPPPPPPTQHDSPDSRDLMQKPMPARSFETVKAKEGDCKLFGISLISSPSTPEPSKINVACKPASHKHLTSQRPCTKESDLKSEQPSGSKLPDAAVDTDDHEKPSQTFQPRVKGVQAKPRSDSARSCTKVHKKGIALGRSVDLTKFSNYDELIVELDELFEFGGELRSLKKDWLIVYTDNEGDMMLVGDDPWPEFCAMVRKICIYPKEEIQKMNPGTIRFGGEESLSASEGMDAKEV 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4820g00036 837 ProSiteProfiles PB1 domain profile. 725 818 IPR000270 GO:0005515
Pral4820g00036 837 ProSiteProfiles B3 DNA-binding domain profile. 160 262 IPR003340 GO:0003677
Pral4820g00036 837 MobiDBLite consensus disorder prediction 593 620 - -
Pral4820g00036 837 CDD B3_DNA 158 260 IPR003340 GO:0003677
Pral4820g00036 837 MobiDBLite consensus disorder prediction 387 425 - -
Pral4820g00036 837 FunFam Auxin response factor 323 395 - -
Pral4820g00036 837 FunFam Auxin response factor 720 814 - -
Pral4820g00036 837 SUPERFAMILY CAD & PB1 domains 727 802 - -
Pral4820g00036 837 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 52 814 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral4820g00036 837 MobiDBLite consensus disorder prediction 663 724 - -
Pral4820g00036 837 Pfam Auxin response factor 286 368 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral4820g00036 837 Pfam B3 DNA binding domain 160 261 IPR003340 GO:0003677
Pral4820g00036 837 Gene3D - 157 262 IPR015300 -
Pral4820g00036 837 Gene3D - 720 814 - -
Pral4820g00036 837 Gene3D - 323 394 - -
Pral4820g00036 837 MobiDBLite consensus disorder prediction 457 476 - -
Pral4820g00036 837 Pfam AUX/IAA family 771 809 IPR033389 -
Pral4820g00036 837 MobiDBLite consensus disorder prediction 1 23 - -
Pral4820g00036 837 SMART B3_2 160 262 IPR003340 GO:0003677
Pral4820g00036 837 FunFam Auxin response factor 158 262 - -
Pral4820g00036 837 SUPERFAMILY DNA-binding pseudobarrel domain 157 289 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4820g00036 Pral-Chr4820 185469 190798 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4820g00036 4 837 B3 DNA Binding Superfamily AT5G62000 61.227 0.0 1012
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral4820g00036 B3 1.7e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4820g00036 - - aip:107612759 1175.61