Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4820g00032 ATGGCAGCTTTTTCATTCCAATACCACCCTTTCCTTGTTGACTCTCCATTTTTCTCTAGTGCTCCCATTAAGATGCCAGCTTTCACTGAGCAGCCTCAGGTTCAGGCTCAGGCTCATACAAATCCTGCTCCTCAGTTTCAAGAGACATCTTTAGAGAATTGCTTCGTTGATCAAAGCTCCAAGTTTAACATGAGTGATAATGAGCCTTCTTCTGTGACCAAAAACCAGAGTCCTGAGACCTCTGTGGTGTTGGATAAGCTTGAACCTGGTGAGCAGGTTACTCAGAAGGTGACTCCTATGGAGAAGAGGAGGAGAAACAGGAATCGTTCTTCCCTGAGTCATCCTCAATCGAAGGAGCCTACCGGAGAAAGAAACAAGAGACAAAAAAAGAGCAACAATGGTGAGGTGAAGGAAGGAGATAAGCCAAAAGATAAAAAGAAGAATCAGAAGAAGAGTCCTGAAGAACCTCCAACAGGTTATATCCACGTAAGAGCAAGAAGGGGTCAGGCAACCGATAGCCACAGCCTAGCTGAAAGGGCAAGAAGAGAGAAGATAAGTGAGAGGATGAAGTTGTTGCAGCGACTTGTGCCAGGCTGTGATAAGGTGACTGGAAAAGCCCTCATGTTGGATGAAATCATCAATTATGTTCAGTCCCTACAAAATCAAGTGGAGTTCTTGTCAATGAAACTTGCTTCTGTGAATCCCATGTTCTATGACTTCACAATGGACCTTGACTCCCTCATGATCAGACCAGAGAAATCAAATTGCGTGGCATCAGCACCGCCATCTGTGCAACAAGGCAACCTCAACCAGGCCACAACTTTTGCTGATACAACCACCATTACCGCCACCGCTAGCACTGGCTTTCCTACTGCTAATGACTATCCATTGGACAATTCAGCTTCTTCTTTTCTCCAAGGACAGAGAGCCAATGTCTTATCTGAGGACACAGGTAGTCAATTCTGGGACATAGAAGACCCACGCCAAAAGTTTCTTCATCCGTATGGGATCAACAACAGCTTATGTTTCTTTCATTAA 1038 0.4489 MAAFSFQYHPFLVDSPFFSSAPIKMPAFTEQPQVQAQAHTNPAPQFQETSLENCFVDQSSKFNMSDNEPSSVTKNQSPETSVVLDKLEPGEQVTQKVTPMEKRRRNRNRSSLSHPQSKEPTGERNKRQKKSNNGEVKEGDKPKDKKKNQKKSPEEPPTGYIHVRARRGQATDSHSLAERARREKISERMKLLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFYDFTMDLDSLMIRPEKSNCVASAPPSVQQGNLNQATTFADTTTITATASTGFPTANDYPLDNSASSFLQGQRANVLSEDTGSQFWDIEDPRQKFLHPYGINNSLCFFH 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4820g00032 345 Gene3D - 166 238 IPR036638 GO:0046983
Pral4820g00032 345 SMART finulus 175 225 IPR011598 GO:0046983
Pral4820g00032 345 MobiDBLite consensus disorder prediction 60 82 - -
Pral4820g00032 345 MobiDBLite consensus disorder prediction 119 153 - -
Pral4820g00032 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 219 IPR011598 GO:0046983
Pral4820g00032 345 MobiDBLite consensus disorder prediction 167 181 - -
Pral4820g00032 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 236 IPR036638 GO:0046983
Pral4820g00032 345 Pfam Helix-loop-helix DNA-binding domain 173 220 IPR011598 GO:0046983
Pral4820g00032 345 CDD bHLH_AtBPE_like 159 244 - -
Pral4820g00032 345 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 47 269 IPR024097 GO:0006355
Pral4820g00032 345 FunFam Basic helix-loop-helix transcription factor 166 238 - -
Pral4820g00032 345 MobiDBLite consensus disorder prediction 60 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4820g00032 Pral-Chr4820 134905 137499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4820g00032 112 252 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 67.133 1.38e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4820g00032 HLH 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4820g00032 - - gmx:100806696 389.808