Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4820g00018 ATGGGTTGCGTGCTCGGAGCGGCGAAGGATGATGCAGGCCCAAGGGGGGGCTCCGGAGCTCAGAACCGTCCTGAGCAAAGCTCTGTTGCTGACGGAGGTAATGCTGTTGGCGTTGGGAACAGAGGGAAGGCGAAGGAGAAGCAAAGGACTCGACAGCATGGCGGCGAATTTGTTTATAATCTCCAGGGACTGGAACGCCGGCAACCTAGTCTTGATCCACGTGCTCAAACCCAACAGGGGTGGCCGTCTTGGTTGATGGCTGTAGCTGGCGACGCAATCCGAGATTGGACTCCTCGGCGCGCCAACACGTTCGAGAAACTTGCGAAGATTGGACAAGGGACGTATAGCAATGTATACAAGGCGAGAGACCTTCTTACCGGAAAGATAGTAGCTTTAAAGAAAGTTAGGTTTGATAATCTGGAGCCAGAGAGTGTGAAGTTCATGGCGAGAGAGATTCTTGTTTTGAGGCGGCTTGATCACCCCAACATCGTCAAACTCGAGGGCTTGGTTACTTCTAGAATGTCATGCAGTCTTTACTTAATATTCGAGTATATGGAACATGATCTTGCGGGGCTGGCTGCTGGGCAAGGTGTTAAGTTCACTGAACCTCAAGTGAAATGCTATATGAAGCAATTACTCTCTGGCCTTGAGCATTGCCATAGCAAAGGTGTCTTGCATCGTGATATCAAGGGTTCTAATCTGCTTATTGACGATGAAGGAATCCTTAAAATCGCTGATTTTGGACTGGCAACTTTCTATGATCCTGAGCACAAGCAGCCTTTGACAAGTAGAGTTGTCACGCTTTGGTATCGTGCTCCTGAGCTTCTTCTTGGGGCTACATACTATGGTGTTGGTATTGACATCTGGAGTGCTGGCTGCATCTTGGGAGAGCTGCTTACGGGGAAGCCAATCATGCCTGGCCGAACAGAGGTTGAACAACTGCACAAAATATTTAAATTATGTGGTTCTCCATCTGATGACTACTGGAAGAAATATAAACTTCCAAATGCTACACTCTTTAAGCCACAGCAGCCATATAAACGATGCATTTTAGAAACCTTCAAGGATTTCCCTCCTTCTTCTGTACATCTAATATGTACTCTTCTTTCAATAGATCCTGATGATCGTGGAACTGCCTCGGCTGCTCTAAATAGTGATTTTTTTACCACTGAGCCCTATGCTTGTGAACCGTCAAGTTTGCCAAAGTATCCTCCCAGCAAAGAACTGGATATAAAACTGAGAGATGAGGAAGCTAGAAGACAAAAAGCTCTAAATGGGAAAACTAATGCAGTTGATGGTGCCAAAAGAGTCAGAGTACGTGAGCGTGGTCGGGCAATTCCTGCTCCGGAAGCCAATGCAGAGATCCAATCAAACTTAGATAGGTGGAGAGTTGTGACACATGCAAATGCAAAAAGTAAGAGCGAGAAATTCCCACCGCCTCATCAAGACGGTGCCGTTGGTTATCCATTGGATGCATCTCACAAGGGACCTGTTTCATTTGGTGCCACTGAACCTGATGCTTCCTTTGGCTCCTCAGTATTTAATTCAAAACCAAAAGGATCTGTTGAAGGTCATGCTGCTTCAGGACCTTACAGAGGTAAGAAAACAAAGAAAACAGATTCATCATGGAGACTCAAGCGTCCGTTCAAGTAA 1653 0.4646 MGCVLGAAKDDAGPRGGSGAQNRPEQSSVADGGNAVGVGNRGKAKEKQRTRQHGGEFVYNLQGLERRQPSLDPRAQTQQGWPSWLMAVAGDAIRDWTPRRANTFEKLAKIGQGTYSNVYKARDLLTGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNIVKLEGLVTSRMSCSLYLIFEYMEHDLAGLAAGQGVKFTEPQVKCYMKQLLSGLEHCHSKGVLHRDIKGSNLLIDDEGILKIADFGLATFYDPEHKQPLTSRVVTLWYRAPELLLGATYYGVGIDIWSAGCILGELLTGKPIMPGRTEVEQLHKIFKLCGSPSDDYWKKYKLPNATLFKPQQPYKRCILETFKDFPPSSVHLICTLLSIDPDDRGTASAALNSDFFTTEPYACEPSSLPKYPPSKELDIKLRDEEARRQKALNGKTNAVDGAKRVRVRERGRAIPAPEANAEIQSNLDRWRVVTHANAKSKSEKFPPPHQDGAVGYPLDASHKGPVSFGATEPDASFGSSVFNSKPKGSVEGHAASGPYRGKKTKKTDSSWRLKRPFK 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4820g00018 550 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524
Pral4820g00018 550 PANTHER CELL DIVISION PROTEIN KINASE 102 392 - -
Pral4820g00018 550 FunFam probable serine/threonine-protein kinase At1g54610 91 186 - -
Pral4820g00018 550 SUPERFAMILY Protein kinase-like (PK-like) 97 393 IPR011009 -
Pral4820g00018 550 SMART serkin_6 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4820g00018 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Pral4820g00018 550 MobiDBLite consensus disorder prediction 533 550 - -
Pral4820g00018 550 MobiDBLite consensus disorder prediction 1 56 - -
Pral4820g00018 550 Pfam Protein kinase domain 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4820g00018 550 ProSiteProfiles Protein kinase domain profile. 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4820g00018 550 FunFam probable serine/threonine-protein kinase At1g54610 187 428 - -
Pral4820g00018 550 Gene3D Transferase(Phosphotransferase) domain 1 187 428 - -
Pral4820g00018 550 CDD STKc_CDK9_like 104 388 - -
Pral4820g00018 550 Gene3D Phosphorylase Kinase; domain 1 90 186 - -
Pral4820g00018 550 MobiDBLite consensus disorder prediction 470 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4820g00018 Pral-Chr4820 103623 108003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4820g00018 96 422 Core Cell Cycle Gene Families AT5G10270 50.146 5.43e-113 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pral4820g00018 Pkinase 3.7e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4820g00018 K08819 - gmx:100807756 897.501