Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4817g00002 ATGTCTCCAGCTTCTGAATATTCCTCGGAGATCAAAGAGGCTTATATTCCTCTAAAACGGATGACCAGGTGGCTGTTATTCTTGGCCATCTCAGGACTCAGCTGTGCAACTACTGGTCCTGATGTGGAAGGTGAAGCTTTGTTAGATTTTTTGAAGGTCCTCAATGATTCTAACCATCAGATGACAGATTGGAATAGTTTTCTTGTGAGCCCATGCTTTAGTTGGTCTCATGTCACATGCAGAGATGGACATGTCATATCTCTGAGCTTGGGTTCAAAAGGATTTTCAGGGACACTGTCTCCTTCAATTACCAAATTGAAATACTTGATTACCTTGGAATTGCAGAACAATAGTCTTTCAGGTTTCTTGCCTGATTATATTGCCAAGTTGACACGCCTGCAATATCTAAATCTTGCTGACAATAATTTTAATGGTTCCATACCATCCACGTGGGGTCAACTTTCCTCTCTAAGGACTCTGGTATTGAAAGGGAATGACTTGTTTGGATTCATACCGGATTCTGTTGAAAATCTCAGTAGGTTATCAGAATTGGATCTTTCTTCTAATAATTTAACTGGAACCATCCCAAAGCACCTCTTTTCAATTCCAATCTTCAACTTTTCAAATACGAACCTTCAATGTGGCTCTAGCTTGGAGCAACCTTGTGCTTCTAATTCAGCTATTCCAGCTTCAACCAACAAATCAAAAGTTGCAGTGGCTTTAAGTTTGGCAAGTTGTGGCGCCTTCGGAATTCTATGTTTAGGGGTCATCTTTACATATGTATACCGATTCGCGCAAAGACACAAAAGTGATGTTTTTGTTGATGTTTCAGGTGAAGATGAGAGCAAGATTTCATTTGGGCAATTGAGAAGATTTTCTTTGCGTGAACTTCAGCTAGCCACAAAAAATTTCAGTGAAAGCAACGTGATTGGCCAAGGAGGCTTTGGAAGAGTATACAAAGGAGTACTCTTGGACAACACAAGGATTGCAGTGAAACGCCTGGCCGATTATCATAATCCTGGTGGAGAGGCCGCATTCCAAAGAGAAGTTCAACTTATAAGCGTTGCAGTTCACAGAAATCTCCTACGTTTGATTGGGTTCTGTACAACCTCAACCGAAAGAATCCTTGTATATCCTTTCATGCAAAATCTAAGTGTTGCATATCGCTTGAGAGATTTGAAACCTGGAGAGAGAGGTCTGGACTGGCCAACAAGGAAACGTATAGCATTTGGTACAGCACATGGATTGGAGTATTTGCACGAGCAATGTAATCCTAAGATCATACATCGCGATTTAAAGGCAGCAAACATCCTGTTAGATGATGAATTTGAAGCAGTTCTCGGAGATTTTGGCCTAGCTAAGCTGGTTGACACAAGACTGACCAGTGTTACCACTCAAGTGAGGGGTACAATGGGACATATAGCCCCAGAATACTTGTCCACAGGAAAATCATCAGAAAAAACTGATGTCTTTGGATATGGCATAACACTTCTTGAAATTGTGACAGGTCAACGAGCAATCGACTTCTCCCGGCTCGAAGAAGAGGAGGAGGTTCTTCTGCTAGATCATATTAAGAAGCTGCTGAGGGAGAAGAGGATAAAGGACATAGTGGACAAGAATTTGGAGAGCTATGATGTGAAGGAAGTGGAGAGGATTATTCAGGTTGCCTTGCTTTGCACGCAAGGCTCGCCTGAGGATCGACCAAGCATGTCAGAGGTAGTGAATTTGCTGAATGGGGAAGGTTTGGCAGAGAGATGGGCAGAGTGGGAGCTAATGGAAGAGATGAACAATAGAGAAATGTCACTCTTGGCTCACCAATTTGCTTGGGCTGATGAATCTACGCACCATCAAGAGGCTATTCAGCTTTCCTGGGCAAGATAA 1881 0.4237 MSPASEYSSEIKEAYIPLKRMTRWLLFLAISGLSCATTGPDVEGEALLDFLKVLNDSNHQMTDWNSFLVSPCFSWSHVTCRDGHVISLSLGSKGFSGTLSPSITKLKYLITLELQNNSLSGFLPDYIAKLTRLQYLNLADNNFNGSIPSTWGQLSSLRTLVLKGNDLFGFIPDSVENLSRLSELDLSSNNLTGTIPKHLFSIPIFNFSNTNLQCGSSLEQPCASNSAIPASTNKSKVAVALSLASCGAFGILCLGVIFTYVYRFAQRHKSDVFVDVSGEDESKISFGQLRRFSLRELQLATKNFSESNVIGQGGFGRVYKGVLLDNTRIAVKRLADYHNPGGEAAFQREVQLISVAVHRNLLRLIGFCTTSTERILVYPFMQNLSVAYRLRDLKPGERGLDWPTRKRIAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDTRLTSVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLEIVTGQRAIDFSRLEEEEEVLLLDHIKKLLREKRIKDIVDKNLESYDVKEVERIIQVALLCTQGSPEDRPSMSEVVNLLNGEGLAERWAEWELMEEMNNREMSLLAHQFAWADESTHHQEAIQLSWAR 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4817g00002 626 Pfam Leucine Rich Repeat 156 178 IPR001611 GO:0005515
Pral4817g00002 626 Gene3D Transferase(Phosphotransferase) domain 1 381 597 - -
Pral4817g00002 626 SMART serkin_6 304 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4817g00002 626 Pfam Leucine rich repeat N-terminal domain 42 80 IPR013210 -
Pral4817g00002 626 FunFam Somatic embryogenesis receptor kinase 1 273 380 - -
Pral4817g00002 626 ProSiteProfiles Protein kinase domain profile. 304 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4817g00002 626 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
Pral4817g00002 626 FunFam Leucine-rich repeat receptor-like protein kinase 40 197 - -
Pral4817g00002 626 Pfam Protein kinase domain 305 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4817g00002 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Pral4817g00002 626 FunFam Somatic embryogenesis receptor-like kinase 1 381 597 - -
Pral4817g00002 626 SUPERFAMILY Protein kinase-like (PK-like) 282 577 IPR011009 -
Pral4817g00002 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 24 588 - -
Pral4817g00002 626 Gene3D Ribonuclease Inhibitor 40 224 IPR032675 -
Pral4817g00002 626 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Pral4817g00002 626 SUPERFAMILY L domain-like 43 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4817g00002 Pral-Chr4817 3093 7149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4817g00002 21 626 Receptor kinase-like Gene Family AT5G10290 58.756 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Pral4817g00002 Pkinase 8.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4817g00002 - - pcin:129307818 938.717