Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4816g00080 ATGGGAGATGGTAATACTACCACCGGCAGCAATCGGTCCAACAACAACAACAACAGTAATAAGCCTGAGTGGCTACAACAGTACGATCTGATAGGGAAAATTGGGGAAGGTACCTATGGTCTTGTATTCCTCGCAAGGATCAAGTCTGCCACGAATCGTGGAAAATCAATTGCCATCAAGAAATTCAAGCAGTCCAAGGATGGAGACGGAGTCTCTCCCACTGCTATCCGTGAAATTATGTTACTCAGGGAGATAACGCATGAAAATGTTGTGAAGCTTGTGAATGTTCACATCAACCATGCCGATATGTCTCTGTACCTAGCTTTTGATTATGCTGAGCATGACCTTTATGAAATCATTCGGCATCATAGGGACAAGGTCAACCATTCTATTAATCAATATACTGTTAAGTCATTACTTTGGCAGTTGCTCAACGGACTAAACTATCTGCATAGTAATTGGATAATTCATCGAGACCTTAAGCCATCAAATATATTGGTTATGGGTGAAGGAGAGGAACACGGAGTTGTTAAAATTGCTGACTTTGGACTTGCAAGGATATATCAAGCCCCTTTAAAGCCATTATCTGAAAATGGAGTTGTTGTTACCATATGGTATCGTGCACCTGAGTTGCTTCTTGGGGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTGTTGGATGCATTTTTGCTGAGCTGTTGACACTAAAGCCACTATTCCAAGGAGCAGAAGTCAAAGCCACACCCAATCCATTTCAGCTTGATCAACTTGACAAGATATTTAAGGTTTTAGGCCATCCCACATCAGAAAAGTGGCCTACCCTAGCATATCTTCCCCATTGGCAACAAGATCTTCAGCGTATACAAGGGCACAAATATGACAACACTAGCCTTTGTAATGTTGTACACCTACCTCCAAAAAGTCCTGCTTACGATCTCCTATCAAAGATGCTTGAATATGATCCTCGAAAGCGGATAACGGCGGCACAAGCTTTGGAACATGAGTATTTCAAAATGGAACCACTACCTGGGCGGAATGCTCTTGTGCCCTGCCAACCTGGAGAGAAAATTGTGAATTATCCCACTCGTCCAGTTGATACAACAATAGATTTTGAAGGGACAACCAATTTGCAACCTTCTCAACCGGTTTCATCTGGAAATGCTGTTTCTGGTAACATGACAGGCGGTCATGTATCAAATAGACCTGTCCCTCGGCCAATGAATGTTGTTGGCATGCAAAGGATGCCACCTATGCAAGCTTATAATCTTGCATCCCAGGCGGGGATGGGTGGTGGAATGAATTCTAGCATCCCTATGCCACGAGGTGTTGCACAGGCTCATCAGCAGCAGCAGTTGAGAAGGAAAGATGGTGGAATGATGTTGCCTGGATACCCTTCACAGCAAAAGTCTAGGCGTAACTAA 1425 0.4358 MGDGNTTTGSNRSNNNNNSNKPEWLQQYDLIGKIGEGTYGLVFLARIKSATNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKVNHSINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTSEKWPTLAYLPHWQQDLQRIQGHKYDNTSLCNVVHLPPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKMEPLPGRNALVPCQPGEKIVNYPTRPVDTTIDFEGTTNLQPSQPVSSGNAVSGNMTGGHVSNRPVPRPMNVVGMQRMPPMQAYNLASQAGMGGGMNSSIPMPRGVAQAHQQQQLRRKDGGMMLPGYPSQQKSRRN 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4816g00080 474 ProSitePatterns Protein kinases ATP-binding region signature. 34 61 IPR017441 GO:0005524
Pral4816g00080 474 SMART serkin_6 28 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4816g00080 474 FunFam Putative cyclin-dependent kinase E-1 112 351 - -
Pral4816g00080 474 SUPERFAMILY Protein kinase-like (PK-like) 23 340 IPR011009 -
Pral4816g00080 474 Gene3D Transferase(Phosphotransferase) domain 1 111 353 - -
Pral4816g00080 474 MobiDBLite consensus disorder prediction 375 398 - -
Pral4816g00080 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Pral4816g00080 474 Pfam Protein kinase domain 28 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4816g00080 474 PANTHER CELL DIVISION PROTEIN KINASE 26 344 - -
Pral4816g00080 474 Gene3D Phosphorylase Kinase; domain 1 11 110 - -
Pral4816g00080 474 MobiDBLite consensus disorder prediction 1 22 - -
Pral4816g00080 474 CDD STKc_CDK8_like 27 338 - -
Pral4816g00080 474 ProSiteProfiles Protein kinase domain profile. 28 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4816g00080 474 FunFam Cyclin-dependent kinase e-1 16 111 - -
Pral4816g00080 474 MobiDBLite consensus disorder prediction 432 474 - -
Pral4816g00080 474 MobiDBLite consensus disorder prediction 375 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4816g00080 Pral-Chr4816 405600 411852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4816g00080 1 473 Core Cell Cycle Gene Families AT5G63610 75.574 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Pral4816g00080 Pkinase 5.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4816g00080 K02208 - qsa:O6P43_023415 832.402