Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4816g00078 ATGAGTGGTGGATTAGAGTTGCCCCCTGGATTCAGATTTCACCCAACCGATGAGGAATTGGTGAATCATTATCTGTGTAGGAAATGTGCTTCCCAGTCGATTGCTGTTCCTGTTATCAAAGAGATTGATTTGTACAAGTTTGATCCTTGGCAGCTTCCTGAAATGACGCAATACGGAGAGAAAGAATGGTACTTCTTCTCGCCAAGAGACAGAAAATATCCAAACGGGTCAAGACCCAACAGGGCAGCCGGAAGTGGGTACTGGAAGGCGACCGGAGCAGACAAGGCCATCGGAAGGCCTAAGCCTCTCGGAATCAAGAAGGCCCTCGTTTTCTACGCCGGCAAAGCCCCCAAAGGCATCAAAACCAATTGGATCATGCACGAATATCGCCTCGCCAATGTTGATCGCTCTGCTCGCAAGAACAACAACTTGAGGCTTGATGATTGGGTACTGTGCCGAATTTACAACAAAAAAGGTGTGATTGAGAAATACAACACCCAGGATCAGAAATCGAGCAGGTTTTCCTCAGACGTTGATGAGCACGAAACTAAACCAGAAATCAACATGGTCGCCAATGACCAATTGTACATGGACACGTCGGAATCGGTGCAGCGGTTGCACACGGACTCCAGCTGCTCCGAGCACGTGGTGTCGCCGGACGTCACGTGCTGTGAGAAGGAGGTCCAGAGCGAGCCCAAGTGGAATGAGCTGCCGCTGGGATTGAAAGACGACGCCTTCGATTTTGAGCTCAATTACATGGACAATATGAATAGTAACTTCACGGGATACGACGCTTTTGTTCCTCAGGGCCAGTACCAAATGAACCAGCTCTCGCCCCTGCAGGACATGTTCATGTACCTTCCGAAACCATTTTAA 876 0.492 MSGGLELPPGFRFHPTDEELVNHYLCRKCASQSIAVPVIKEIDLYKFDPWQLPEMTQYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKAIGRPKPLGIKKALVFYAGKAPKGIKTNWIMHEYRLANVDRSARKNNNLRLDDWVLCRIYNKKGVIEKYNTQDQKSSRFSSDVDEHETKPEINMVANDQLYMDTSESVQRLHTDSSCSEHVVSPDVTCCEKEVQSEPKWNELPLGLKDDAFDFELNYMDNMNSNFTGYDAFVPQGQYQMNQLSPLQDMFMYLPKPF 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4816g00078 291 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 207 - -
Pral4816g00078 291 Gene3D NAC domain 16 162 IPR036093 GO:0003677|GO:0006355
Pral4816g00078 291 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Pral4816g00078 291 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Pral4816g00078 291 FunFam NAC transcription factor 16 161 - -
Pral4816g00078 291 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4816g00078 Pral-Chr4816 393536 395210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4816g00078 1 291 NAC Transcription Factor Family AT1G01720 63.455 9.70e-127 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral4816g00078 NAM 7.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4816g00078 - - gmx:100170751 453.751