Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4816g00064 ATGGACGATGAGAGCTACAACAGTTTGCCAAATGGGGTCATTACAGGAAGCCCTGAAAGCCCCTCCCTAAAGACTTCTTCAAGCACCAACAATAATAACAATAGCAGCAGCAACAAAGAACAAGATCGCTTTCTCCCCATAGCCAATGTGGGAAGAATCATGAAGAAAGTTATGCCTGCGAATGGAAAAATCTCAAAGGACGCTAAAGAGACCGTTCAAGAATGTGTATCGGAGTTCATCAGCTTCGTCACCGGGGAAGCCTCTGATAGATGTCAAAAAGAGAAGAGGAAGACCATCAATGGAGATGATATTATATGGGCAATCACAACCCTGGGGTTTGAGGATTACGTGGAACCTTTAAAATGTTACCTTCAAAAGTATAGAGACATAGAAGGAGAGAAGCTTAATATCCCAAAACAACAACGTTCTGAGCAAAGGCTCCACCATCACCACCACCACCAAGACCAAGCTAATACTGTTAATAATAATAATTTACCTTTAACTAGTGTCTATTCTTCCACAAATCTAATTTCTCAGCCTGCCTATGTGGCTGCTGGCCAGCCCTTTACTCTACCGTTCTCCCCAAATTCTATCAAACAGGACCAGATTGATTCGGTGGCACACTGGTAA 630 0.4286 MDDESYNSLPNGVITGSPESPSLKTSSSTNNNNNSSSNKEQDRFLPIANVGRIMKKVMPANGKISKDAKETVQECVSEFISFVTGEASDRCQKEKRKTINGDDIIWAITTLGFEDYVEPLKCYLQKYRDIEGEKLNIPKQQRSEQRLHHHHHHQDQANTVNNNNLPLTSVYSSTNLISQPAYVAAGQPFTLPFSPNSIKQDQIDSVAHW 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4816g00064 209 Gene3D Histone, subunit A 31 165 IPR009072 GO:0046982
Pral4816g00064 209 MobiDBLite consensus disorder prediction 1 45 - -
Pral4816g00064 209 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 44 108 IPR003958 -
Pral4816g00064 209 ProSitePatterns NF-YB/HAP3 subunit signature. 75 91 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pral4816g00064 209 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Pral4816g00064 209 PRINTS CCAAT-binding transcription factor subunit A signature 110 128 - -
Pral4816g00064 209 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Pral4816g00064 209 MobiDBLite consensus disorder prediction 8 43 - -
Pral4816g00064 209 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 25 161 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pral4816g00064 209 SUPERFAMILY Histone-fold 41 155 IPR009072 GO:0046982
Pral4816g00064 209 MobiDBLite consensus disorder prediction 140 163 - -
Pral4816g00064 209 FunFam Nuclear transcription factor Y subunit B-3 33 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4816g00064 Pral-Chr4816 295945 296574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4816g00064 12 209 CCAAT-HAP3 Transcription Factor Family AT2G13570 59.716 4.08e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pral4816g00064 CBFD_NFYB_HMF 1.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4816g00064 K08065 - gmx:100778216 275.018