Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4816g00055 ATGAACGAAGCTGAAATGACGATTCCTCACTTGTTCAGGTGCCCGATCAGTCTAGACTTGTTTGAGGATCCAGTGACCTTGTGCACGGGCCAAACCTACGATAGATCCAGCATAGAAAGATGGATTGCTCAAGGTAATCTCACTTGCCCTGTCACAATGCAGAAGCTTCATGATCTATCCATCGTCCCCAATCACACTCTTCGACATTTGATCGATCAGTGGCTTCAATTTTACCCTCAATTTGACCACTTTGGTAACTCTCAAACCATTGATTCTCTTGCCTCTCTGAGACGCACCCTTCAGTCTCAGGAATCCACCTTCCAGAACAAACTCCAAGCACTTGAAAAGATCAGGCTCTTATCTGATGAGTATTGCTCTTTCAAGAAATCCTGCTTCCTCCAATTGGGTTTCTTGCCTCTTCTCTTGGGACTAGTTTTCGGAGCTCAAACGTCCAAAGAGCAGCATCACATGGAGTTCTTAGACCTAGCTCTTTCTTGCATTATGAAGTTGTTACCCCTTGACAGTACCTCAGAGCCTCTAAATATGCTCAAAGAAGAAACTAAATTAGAATCGTATCTTCTATTATTCGAAAAGGGCAGTCCCAATATTAAAACCAGCCTGTGTAATCTGATAGATTCAGCGGCGGCAGCACATTTAGAAGAGGTATTGCTTAGACTCGGAAACTCCCAGAAACTACTCAATGAAATTGTTCATCTTGCAGGCCAAAATAACTGCGAGGCTTCCAGGGCTGCAATTAAAGCCATATCAGCGTTATGTTCCTTGCAATCAAACAGAGAGAATCTGGTAATAGCAGGGGCAATAGATGGCATCATGAGGTACATTTCAGGATGTGAAACAAGAGATAAGAACCTGGCTCCATTGGGGATGGAGATAATAGAGAAGCTTCTGGTAATAGAGAGAGGCAAAGAAGCATTGGCGAACAGTCCAGATGGGATTCAAACTTTGGTAAGGATGGTGTTCAGAGTGAGTAATCAAGAGTGTAGTGAGAATGCTGTGGGGCTACTGATAATGGTGTGCAGAGAAAGCGGGCGAGCGAGAGAGGAAGCCATTGAAGAAGGAATTCTGACTCAGTTGCTTTTGCTTCTGCAGAGCCAATGTAGTGCCAAGTCGAAGACGAAGGCAAGAACGCTTCTCAAATTGTTAAGATCCAAGTGGGCTGACAAAGTACCAAAACAGCCCTAA 1203 0.4422 MNEAEMTIPHLFRCPISLDLFEDPVTLCTGQTYDRSSIERWIAQGNLTCPVTMQKLHDLSIVPNHTLRHLIDQWLQFYPQFDHFGNSQTIDSLASLRRTLQSQESTFQNKLQALEKIRLLSDEYCSFKKSCFLQLGFLPLLLGLVFGAQTSKEQHHMEFLDLALSCIMKLLPLDSTSEPLNMLKEETKLESYLLLFEKGSPNIKTSLCNLIDSAAAAHLEEVLLRLGNSQKLLNEIVHLAGQNNCEASRAAIKAISALCSLQSNRENLVIAGAIDGIMRYISGCETRDKNLAPLGMEIIEKLLVIERGKEALANSPDGIQTLVRMVFRVSNQECSENAVGLLIMVCRESGRAREEAIEEGILTQLLLLLQSQCSAKSKTKARTLLKLLRSKWADKVPKQP 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4816g00055 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 78 IPR013083 -
Pral4816g00055 400 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Pral4816g00055 400 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Pral4816g00055 400 SUPERFAMILY RING/U-box 3 76 - -
Pral4816g00055 400 FunFam RING-type E3 ubiquitin transferase 8 79 - -
Pral4816g00055 400 Gene3D - 82 396 IPR011989 -
Pral4816g00055 400 PANTHER WDSAM1 PROTEIN 5 394 IPR045185 GO:0061630
Pral4816g00055 400 CDD RING-Ubox_PUB 9 56 IPR045210 -
Pral4816g00055 400 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
Pral4816g00055 400 SUPERFAMILY ARM repeat 95 388 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4816g00055 Pral-Chr4816 248824 250638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4816g00055 8 394 U-box Gene Family AT3G19380 31.605 6.07e-46 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4816g00055 - - gmx:100819468 509.99