Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4816g00049 ATGTCCAGAAGCAGTAGCAGTGAGAGTAAGAGTTGTAACAGAGGCCATTGGAGACCAGCTGAAGATGAGAGACTGAAACAGCTTGTGGGGCAGTACGGTCCTCAGAACTGGAATTTCATTGCGGAACATCTTGATGGGAGATCAGGGAAAAGTTGCAGGTTGAGGTGGTACAACCAACTAGACCCAAACATAGTAAAAAGGCCATTCACAGAGCAGGAGGAGGAAATACTGCTAGCTCTTCACAAGGTAAAAGGAAACAAATGGGCTGCAATTTCAAGGTTCTTGCCCGGAAGAACTGATAATGCTGTCAAGAATCACTTCCATGTCCTTATGGCAAGGAGAAAGAGAGAACGTTACACGCTCTTTGGCGACCGAAGCGGCAATTACACTAGTATTAATCATAATCATATTCCTATAATTGACTCAACCTCGCATAGGCCTACCTCAGGGATTAATAACTTCACCTTCCAAAACAGCAGAAACCTGGGCATCTTCGATATCACTTCCTCACATTCATTAGGACTGAATCCTTGGAATGCTCGAAGTGATTCCTCGACCATCTCGTCAGAGTTACTGAGTTTTGAAGCTCCTGATGCTTCTAAGCCTCACACCGATCACTTTAATGCCTCAAGTTCAGCTGCTTCTTGTTCGCTTGGCAGTTACAGTAGTTTTACTGCCCCAGGAATTCCCAGTATTGGAAGGGTCGTTCCTCTTCCTCAGAGGTTCTCAAAGTCCTATTTTGCCCAAAGAACTGAGGATTATTCCATCAAAGGCATGCCAGACAAGACAACTCTGGAAGAACAAGTTGAAAAGCTTAAAGGTGTTTCCTTTATAGACTTTCTTGGTGTGGGAAGTTGTTCTGCCAGCGACAGTTGA 876 0.4463 MSRSSSSESKSCNRGHWRPAEDERLKQLVGQYGPQNWNFIAEHLDGRSGKSCRLRWYNQLDPNIVKRPFTEQEEEILLALHKVKGNKWAAISRFLPGRTDNAVKNHFHVLMARRKRERYTLFGDRSGNYTSINHNHIPIIDSTSHRPTSGINNFTFQNSRNLGIFDITSSHSLGLNPWNARSDSSTISSELLSFEAPDASKPHTDHFNASSSAASCSLGSYSSFTAPGIPSIGRVVPLPQRFSKSYFAQRTEDYSIKGMPDKTTLEEQVEKLKGVSFIDFLGVGSCSASDS 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4816g00049 291 Gene3D - 14 65 - -
Pral4816g00049 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Pral4816g00049 291 FunFam MYB transcription factor 14 65 - -
Pral4816g00049 291 Pfam Myb-like DNA-binding domain 14 60 IPR001005 -
Pral4816g00049 291 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Pral4816g00049 291 CDD SANT 17 58 IPR001005 -
Pral4816g00049 291 CDD SANT 68 111 IPR001005 -
Pral4816g00049 291 ProSiteProfiles Myb-like domain profile. 9 60 IPR001005 -
Pral4816g00049 291 PANTHER MYB PROTEIN-RELATED 14 193 - -
Pral4816g00049 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Pral4816g00049 291 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Pral4816g00049 291 SUPERFAMILY Homeodomain-like 13 107 IPR009057 -
Pral4816g00049 291 Gene3D - 67 126 - -
Pral4816g00049 291 SMART sant 13 62 IPR001005 -
Pral4816g00049 291 SMART sant 65 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4816g00049 Pral-Chr4816 216864 217992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4816g00049 1 287 MYB Transcription Factor Family AT4G33450 43.098 3.77e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral4816g00049 Myb_DNA-binding 5.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4816g00049 K09422 - qsa:O6P43_023373 218.779