Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4816g00033 ATGGATATCAACCGAAGCCCTACAATGTTCACAAGCGTTAACAACACCACTTGGAATCTGTACAATATGGAAATGGATCAAAACCTCCATCATCAAATCCCTATGTGTTCTCCTTGGCCTAACTTCCCTAATTACCCTCATCAGATGATACCGTCTTCTTCGTCCACCGCAATACCCTCTTCAGGGTTTCTAAACAACGTCGTTTTGGAAGAAGAGCATGAAGAAGAAGAAGAAGAAGAGCTGGGAGAAGTGAAGGAGATGCTGTACAAGATCGCTGCTATGCAGCCAGTGGACATAGACCCAGCCACCATCCGAAAGCCAAAGAGGCGAAACGTCAGAATCAGCGACGATCCACAAAGCGTCGCGGCGAGACACAGAAGAGAGAGGATCAGCGAGAAAATGCGAATCCTCCAAAGACTCGTCCCTGGGGGCACCAAGATGGACACTGCCTCCATGCTCGACGAAGCCATTCGCTATGTCAAGTTCTTGAAGCGACAAATCAGGTTACTCCAATCCCAACCCTCACCCTCACCACCACCTCCACCACAATGCATCACTGACACTCTTGCCAATATTGGGGTTAACAATACTGCTGGTTCTAATATTCATGGCGATCACTGGCCTTTTGCACCACCGTCTTTACTGCACTGTCCCACCACCACCACCACCTCCTCCTCCGCCGCTGCTGCTATGGGCATGCCGGTCCGACTGGGATTCGGTTCGGGCTATAATCATGAGTCATGA 744 0.5 MDINRSPTMFTSVNNTTWNLYNMEMDQNLHHQIPMCSPWPNFPNYPHQMIPSSSSTAIPSSGFLNNVVLEEEHEEEEEEELGEVKEMLYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKMRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSQPSPSPPPPPQCITDTLANIGVNNTAGSNIHGDHWPFAPPSLLHCPTTTTTSSSAAAAMGMPVRLGFGSGYNHES 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4816g00033 247 Pfam Helix-loop-helix DNA-binding domain 124 163 IPR011598 GO:0046983
Pral4816g00033 247 FunFam BHLH transcription factor 117 177 - -
Pral4816g00033 247 Coils Coil 153 173 - -
Pral4816g00033 247 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 32 198 IPR045843 GO:0003700|GO:0006355
Pral4816g00033 247 Gene3D - 117 175 IPR036638 GO:0046983
Pral4816g00033 247 SMART finulus 120 169 IPR011598 GO:0046983
Pral4816g00033 247 CDD bHLH_AtIND_like 115 170 - -
Pral4816g00033 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 119 176 IPR036638 GO:0046983
Pral4816g00033 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 163 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4816g00033 Pral-Chr4816 131200 131943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4816g00033 81 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 85.149 1.89e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4816g00033 HLH 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4816g00033 - - gmx:100779374 207.994