Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral4816g00033 | ATGGATATCAACCGAAGCCCTACAATGTTCACAAGCGTTAACAACACCACTTGGAATCTGTACAATATGGAAATGGATCAAAACCTCCATCATCAAATCCCTATGTGTTCTCCTTGGCCTAACTTCCCTAATTACCCTCATCAGATGATACCGTCTTCTTCGTCCACCGCAATACCCTCTTCAGGGTTTCTAAACAACGTCGTTTTGGAAGAAGAGCATGAAGAAGAAGAAGAAGAAGAGCTGGGAGAAGTGAAGGAGATGCTGTACAAGATCGCTGCTATGCAGCCAGTGGACATAGACCCAGCCACCATCCGAAAGCCAAAGAGGCGAAACGTCAGAATCAGCGACGATCCACAAAGCGTCGCGGCGAGACACAGAAGAGAGAGGATCAGCGAGAAAATGCGAATCCTCCAAAGACTCGTCCCTGGGGGCACCAAGATGGACACTGCCTCCATGCTCGACGAAGCCATTCGCTATGTCAAGTTCTTGAAGCGACAAATCAGGTTACTCCAATCCCAACCCTCACCCTCACCACCACCTCCACCACAATGCATCACTGACACTCTTGCCAATATTGGGGTTAACAATACTGCTGGTTCTAATATTCATGGCGATCACTGGCCTTTTGCACCACCGTCTTTACTGCACTGTCCCACCACCACCACCACCTCCTCCTCCGCCGCTGCTGCTATGGGCATGCCGGTCCGACTGGGATTCGGTTCGGGCTATAATCATGAGTCATGA | 744 | 0.5 | MDINRSPTMFTSVNNTTWNLYNMEMDQNLHHQIPMCSPWPNFPNYPHQMIPSSSSTAIPSSGFLNNVVLEEEHEEEEEEELGEVKEMLYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKMRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSQPSPSPPPPPQCITDTLANIGVNNTAGSNIHGDHWPFAPPSLLHCPTTTTTSSSAAAAMGMPVRLGFGSGYNHES | 247 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral4816g00033 | 247 | Pfam | Helix-loop-helix DNA-binding domain | 124 | 163 | IPR011598 | GO:0046983 | |
Pral4816g00033 | 247 | FunFam | BHLH transcription factor | 117 | 177 | - | - | |
Pral4816g00033 | 247 | Coils | Coil | 153 | 173 | - | - | |
Pral4816g00033 | 247 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 32 | 198 | IPR045843 | GO:0003700|GO:0006355 | |
Pral4816g00033 | 247 | Gene3D | - | 117 | 175 | IPR036638 | GO:0046983 | |
Pral4816g00033 | 247 | SMART | finulus | 120 | 169 | IPR011598 | GO:0046983 | |
Pral4816g00033 | 247 | CDD | bHLH_AtIND_like | 115 | 170 | - | - | |
Pral4816g00033 | 247 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 119 | 176 | IPR036638 | GO:0046983 | |
Pral4816g00033 | 247 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 114 | 163 | IPR011598 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral4816g00033 | Pral-Chr4816 | 131200 | 131943 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral4816g00033 | 81 | 181 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT5G09750 | 85.149 | 1.89e-48 | 157 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Pral4816g00033 | HLH | 4.3e-06 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral4816g00033 | - | - | gmx:100779374 | 207.994 |