Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4816g00032 ATGGTTTGGACAGGTCGGAGTAGGAGCCGGAGCCGGAGCCGGAGCCCTGGCCATTGTTTTAGGTGGGAATCAGGAGTCAATGAAAGAAATAGAATGAGAGCTGGAGGATTGCCACAACCATGTAGAGATTTTGCTGTTGGAAAATGCAGAAGAGGCAGCCGTTGCCATTTTCTTCACCATGATGATCGAAATTATGAGGATGGCTGGGACAGTAGAAGCAGGAAAGATGGACCTCCCAGATATTCCACTCCCTATGAAAGCAGGGACTATTCTGCCAGGAGTGGAAGATCTAATGAGACCTGTATCAATTTTGCGCAAGGCAAATGTAGAATGGGAGCATCTTGCAAGTACGTGCATCATAGCAATTCTGATGATATGAGCAAAGGAAATGTAGATGACTCAACTAGAGAGAGGGAATTTGATCAAAGGCACAGAGAGAGTTCTTTTGAGCGTGGTGGTGGGCATGAGCCAAACCGTTTTAGTGATACTCCCTGCAAATTTTATGCAGCAGGAAATTGTCGCAATGGTAAATATTGCAGGTTTTCTCATGATAGGCGGGCATCTAGAAGCCCCAATCGAAGATTAAGAGATGACAGATGGGGGAATAATCCAGGTGGAGATCAGACATTGGATAGGCCAAGAGGGAGTAACCCAGTCAGTCCTAGTAGAAGGCTGAGAGATGATAGATGGGGTCCAGATGGTAACATGGTTGACATGGATAAGGTGTGGGATGGTCCAAAACTGAATGATGCTGTCGCTGTCTCAGATGCAGCAAAGCTGGGTGAAGATAAGAGTGGAAATATGGGTATACCCGAACCTGGATTCGCTACTTGGCCCAGGACTGATGGATGGAATGGTAATTTAGATAACAACAAAGTGTATGCTGAGCCACCGTTTGTGGGTGACAAGAAGAAAGAAGATCAATGGAAGAAAGAAAATGCTGGTGTTACCATGGGTGCTCCCCAATCAATTGGGACTGACAAATGGCTTGTTGATGCAGAAATGTCTCCTGATTGGAATTATGGGAGTGGATCTTCTGCGCATATTGAAGACAAGAGCGGGCAGAATAAACTTGGTTTGACCCAGGGTGGTGCGTATTCAGCTGCCTCTGAACATCACAGGTTACAAGTTGCTCCAGGACTCAATCAGAACTCACAGAATGAAAATGCTTTGCGTCCTTCTAGCTGTAATGTGGCTGGACAAAGTCAAGGGGCAGTCCCTCTTGTTCCTCCACTTGGAGGGATAGCTGAAGTTATACAGAACCAAGCGTCTTCTGTAAAAAAGTACAGTGGCGAACCAAATATCATGGATGCAAGCTTATCACATGTTAATACGATAAATACTGCTCAAAACATGGTGAGCAATGAACAGCTTGCTCAACTTAGCAGCCTCTCAGCCTCTCTGGTTCAATTCCTGGGAACAGGTCAGCAACTTCCGCAAATTTATGCTGCTCTAAATTCTCATGACGTGAAAAACATATCCTCCCTAGCCAACGCTGAAGCGTCTGGGGAGCCTGTTTCCAGTGCATACATCAAGCCTGATCCTGTTATTGGATCCCGGAAGCTGTATGATCCAGTGAGTGACGGTATGGAGCCAAAGGATACTGATGCTGGTGGAATCACGCCTGCCTTTTCTCCTAGTAAAACAATTGCTGATAGTTCAGGGAGACAACATCCTGGTGATTCTTGTAAAACCTCAGAAGAACAAATTGTCAAGAGTGAACATTTAATTCTATCGCAGCCTGGTCAAAAAGTTGAAGCCAATAAGGCAAACAATGAAGTGGCATCTGAGGAAAGGCAAGATTCTCGAGCAGATGATAGAAATGCAAAAGATAACGGTCCTTCAGAAAATTTGGACCAAAATGGGCCTGATGAGGCAAAGAAGACGAAGGATGTGAAGGGGATTCGTGCTTTTAAATTTGCTCTGGTTGAGTTTGTTAAAGAGCTTCTGAAACCAACATGGAAAGAAGGTCATATCAACAAAGAACATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACTGGTACTATGCAGGGGGCTCATATCCCTCAGACACAAGAAAAAATTGATCACTATCTGTCAGTTTCAAAACCAAAGCTTAACAAACTTGTACAGGCATATGTTGAAAAGGTTCAGAAGGCTTAG 2151 0.443 MVWTGRSRSRSRSRSPGHCFRWESGVNERNRMRAGGLPQPCRDFAVGKCRRGSRCHFLHHDDRNYEDGWDSRSRKDGPPRYSTPYESRDYSARSGRSNETCINFAQGKCRMGASCKYVHHSNSDDMSKGNVDDSTREREFDQRHRESSFERGGGHEPNRFSDTPCKFYAAGNCRNGKYCRFSHDRRASRSPNRRLRDDRWGNNPGGDQTLDRPRGSNPVSPSRRLRDDRWGPDGNMVDMDKVWDGPKLNDAVAVSDAAKLGEDKSGNMGIPEPGFATWPRTDGWNGNLDNNKVYAEPPFVGDKKKEDQWKKENAGVTMGAPQSIGTDKWLVDAEMSPDWNYGSGSSAHIEDKSGQNKLGLTQGGAYSAASEHHRLQVAPGLNQNSQNENALRPSSCNVAGQSQGAVPLVPPLGGIAEVIQNQASSVKKYSGEPNIMDASLSHVNTINTAQNMVSNEQLAQLSSLSASLVQFLGTGQQLPQIYAALNSHDVKNISSLANAEASGEPVSSAYIKPDPVIGSRKLYDPVSDGMEPKDTDAGGITPAFSPSKTIADSSGRQHPGDSCKTSEEQIVKSEHLILSQPGQKVEANKANNEVASEERQDSRADDRNAKDNGPSENLDQNGPDEAKKTKDVKGIRAFKFALVEFVKELLKPTWKEGHINKEHYKTIVKKVVDKVTGTMQGAHIPQTQEKIDHYLSVSKPKLNKLVQAYVEKVQKA 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4816g00032 716 SMART c3hfinal6 37 61 IPR000571 GO:0046872
Pral4816g00032 716 SMART c3hfinal6 159 185 IPR000571 GO:0046872
Pral4816g00032 716 SMART c3hfinal6 96 121 IPR000571 GO:0046872
Pral4816g00032 716 Gene3D - 158 213 - -
Pral4816g00032 716 ProSiteProfiles Zinc finger C3H1-type profile. 35 62 IPR000571 GO:0046872
Pral4816g00032 716 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 40 60 IPR000571 GO:0046872
Pral4816g00032 716 ProSiteProfiles Zinc finger C3H1-type profile. 95 122 IPR000571 GO:0046872
Pral4816g00032 716 MobiDBLite consensus disorder prediction 66 93 - -
Pral4816g00032 716 MobiDBLite consensus disorder prediction 66 82 - -
Pral4816g00032 716 SUPERFAMILY CCCH zinc finger 162 184 IPR036855 GO:0046872
Pral4816g00032 716 MobiDBLite consensus disorder prediction 121 157 - -
Pral4816g00032 716 Pfam CCCH-type zinc finger 164 184 IPR041367 -
Pral4816g00032 716 ProSiteProfiles Zinc finger C3H1-type profile. 159 186 IPR000571 GO:0046872
Pral4816g00032 716 MobiDBLite consensus disorder prediction 120 161 - -
Pral4816g00032 716 Pfam RNA-binding, Nab2-type zinc finger 101 119 - -
Pral4816g00032 716 MobiDBLite consensus disorder prediction 546 560 - -
Pral4816g00032 716 MobiDBLite consensus disorder prediction 591 613 - -
Pral4816g00032 716 MobiDBLite consensus disorder prediction 184 201 - -
Pral4816g00032 716 MobiDBLite consensus disorder prediction 184 233 - -
Pral4816g00032 716 Gene3D - 38 123 - -
Pral4816g00032 716 MobiDBLite consensus disorder prediction 522 630 - -
Pral4816g00032 716 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 7 715 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4816g00032 Pral-Chr4816 118159 122442 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral4816g00032 zf-CCCH 4.5e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4816g00032 - K22909 gmx:100783856 865.144