Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4816g00030 ATGTTTCTAATCCAGCACACTGCATTAATCAGAGGACAGCGACAAGTCTCTAGGAGTGGAATGAGTGGAAGTGGCAGAAGGCGGTCCTCAAAGTGGGATTTAAGAGATGAACCTGAGTTTGTATCGGACAGTAAGCAGTTGCGATCTGGGTGGTCCTCTGCCAATGTTACTGGTAGCAATAGTTCGAAATGGTCTTATTTGGAAGGGAATGAGAAGCTAAAACCTAATTCACGATTACCATTCAAGGAACCTTTTTCTGGAGGCAGAGTTTCTAATAAGGATGATATCATGAATAAAGAATATAATAGGGATTTGGATACCAAAATGGCTTGGGACGCAGATGAAAGCTATGGAATGAAAATGTCTCCAGGGTTGGAGGAATGGAAACGTAAGAGGCGCAGTCATTCCCCAAAAAATGGTTTGGACAGGAGTAGGAGCCGGAGCCGGAGCCGGAGCCCTGGCCATTGTTTTAGGTGGGAATCAGGAGTCAATGAAAGAAATAGAATGAGAGCTGGAGGATTGCCACAACCATGTAGAGATTTTGCTGTTGGAAAATGCAGAAGAGGCAGCCGTTGCCATTTTCTTCACCATGATGATCGAAATTATGAGGATGGCTGGGACAGTAGAAGCAGGAAAGATGGACCTCCCAGATATTCCACTCCCTATGAAAGCAGGGACTATTCTGCCAGGAGTGGAAGATCTAATGAGACCTGTATCAATTTTGCGCAAGGCAAATGTAGAATGGGAGCATCTTGCAAGTACGTGCATCATAGCAATTCTGATGATATGAGCAAAGGAAATGTAGATGACTCAACTAGAGAGAGGGAATTTGATCAAAGGCACAGAGAGAGTTCTTTTGAGCGTGGTGGTGGGCATGAGCCAAACCGTTTTAGTGATACTCCCTGCAAATTTTATGCAGCAGGAAATTGTCGCAATGGTAAATATTGCAGGTTTTCTCATGATAGGCGGGCATCTAGAAGCCCCAATCGAAGATTAAGAGATGACAGATGGGGGAATAATCCAGGTGGAGATCAGACATTGGATAGGCCAAGAGGGAGTAACCCAGTCAGTCCTAGTAGAAGGCTGAGAGATGATAGATGGGGTCCAGATGGTAACATGGTTGACATGGATAAGGTGTGGGATGGTCCAAAACTGAATGATGCTGTCGCTGTCTCAGATGCAGCAAAGCTGGGTGAAGATAAGAGTGGAAATATGGGTATACCCGAACCTGGATTCGCTACTTGGCCCAGGACTGATGGATGGAATGGTAATTTAGATAACAACAAAGTGTATGCTGAGCCACCGTTTGTGGGTGACAAGAAGAAAGAAGATCAATGGAAGAAAGAAAATGCTGGTGTTACCATGGGTGCTCCCCAATCAATTGGGACTGACAAATGGCTTGTTGATGCAGAAATGTCTCCTGATTGGAATTATGGGAGTGGATCTTCTGCGCATATTGAAGACAAGAGCGGGCAGAATAAACTTGGTTTGACCCAGGGTGGTGCGTATTCAGCTGCCTCTGAACATCACAGGTTACAAGTTGCTCCAGGACTCAATCAGAACTCACAGAATGAAAATGCTTTGCGTCCTTCTAGCTGTAATGTGGCTGGACAAAGTCAAGGGGCAGTCCCTCTTGTTCCTCCACTTGGAGGGATAGCTGAAGTTATACAGAACCAAGCGTCTTCTGTAAAAAAGTACAGTGGCGAACCAAATATCATGGATGCAAGCTTATCACATGTTAATACGATAAATACTGCTCAAAACATGGTGAGCAATGAACAGCTTGCTCAACTTAGCAGCCTCTCAGCCTCTCTGGTTCAATTCCTGGGAACAGGTCAGCAACTTCCGCAAATTTATGCTGCTCTAAATTCTCATGACGTGAAAAACATATCCTCCCTAGCCAACGCTGAAGCGTCTGGGGAGCCTGTTTCCAGTGCATACATCAAGCCTGATCCTGTTATTGGATCCCGGAAGCTGTATGATCCAGTGAGTGACGGTATGGAGCCAAAGGATACTGATGCTGGTGGAATCACGCCTGCCTTTTCTCCTAGTAAAACAATTGCTGATAGTTCAGGGAGACAACATCCTGGTGATTCTTGTAAAACCTCAGAAGAACAAATTGTCAAGAGTGAACATTTAATTCTATCGCAGCCTGGTCAAAAAGTTGAAGCCAATAAGGCAAACAATGAAGTGGCATCTGAGGAAAGGCAAGATTCTCGAGCAGATGATAGAAATGCAAAAGATAACGGTCCTTCAGAAAATTTGGACCAAAATGGGCCTGATGAGGCAAAGAAGACGAAGGATGTGAAGGGGATTCGTGCTTTTAAATTTGCTCTGGTTGAGTTTGTTAAAGAGCTTCTGAAACCAACATGGAAAGAAGGTCATATCAACAAAGAACATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACTGGTACTATGCAGGGGGCTCATATCCCTCAGACACAAGAAAAAATTGATCACTATCTGTCAGTTTCAAAACCAAAGCTTAACAAACTTGTACAGGCATATGTTGAAAAGGTTCAGAAGGCTTAG 2562 0.4399 MFLIQHTALIRGQRQVSRSGMSGSGRRRSSKWDLRDEPEFVSDSKQLRSGWSSANVTGSNSSKWSYLEGNEKLKPNSRLPFKEPFSGGRVSNKDDIMNKEYNRDLDTKMAWDADESYGMKMSPGLEEWKRKRRSHSPKNGLDRSRSRSRSRSPGHCFRWESGVNERNRMRAGGLPQPCRDFAVGKCRRGSRCHFLHHDDRNYEDGWDSRSRKDGPPRYSTPYESRDYSARSGRSNETCINFAQGKCRMGASCKYVHHSNSDDMSKGNVDDSTREREFDQRHRESSFERGGGHEPNRFSDTPCKFYAAGNCRNGKYCRFSHDRRASRSPNRRLRDDRWGNNPGGDQTLDRPRGSNPVSPSRRLRDDRWGPDGNMVDMDKVWDGPKLNDAVAVSDAAKLGEDKSGNMGIPEPGFATWPRTDGWNGNLDNNKVYAEPPFVGDKKKEDQWKKENAGVTMGAPQSIGTDKWLVDAEMSPDWNYGSGSSAHIEDKSGQNKLGLTQGGAYSAASEHHRLQVAPGLNQNSQNENALRPSSCNVAGQSQGAVPLVPPLGGIAEVIQNQASSVKKYSGEPNIMDASLSHVNTINTAQNMVSNEQLAQLSSLSASLVQFLGTGQQLPQIYAALNSHDVKNISSLANAEASGEPVSSAYIKPDPVIGSRKLYDPVSDGMEPKDTDAGGITPAFSPSKTIADSSGRQHPGDSCKTSEEQIVKSEHLILSQPGQKVEANKANNEVASEERQDSRADDRNAKDNGPSENLDQNGPDEAKKTKDVKGIRAFKFALVEFVKELLKPTWKEGHINKEHYKTIVKKVVDKVTGTMQGAHIPQTQEKIDHYLSVSKPKLNKLVQAYVEKVQKA 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4816g00030 853 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 21 852 - -
Pral4816g00030 853 MobiDBLite consensus disorder prediction 258 294 - -
Pral4816g00030 853 ProSiteProfiles Zinc finger C3H1-type profile. 172 199 IPR000571 GO:0046872
Pral4816g00030 853 MobiDBLite consensus disorder prediction 321 338 - -
Pral4816g00030 853 SMART c3hfinal6 296 322 IPR000571 GO:0046872
Pral4816g00030 853 SMART c3hfinal6 233 258 IPR000571 GO:0046872
Pral4816g00030 853 SMART c3hfinal6 174 198 IPR000571 GO:0046872
Pral4816g00030 853 MobiDBLite consensus disorder prediction 728 750 - -
Pral4816g00030 853 MobiDBLite consensus disorder prediction 659 767 - -
Pral4816g00030 853 MobiDBLite consensus disorder prediction 126 158 - -
Pral4816g00030 853 MobiDBLite consensus disorder prediction 13 62 - -
Pral4816g00030 853 SUPERFAMILY CCCH zinc finger 299 321 IPR036855 GO:0046872
Pral4816g00030 853 MobiDBLite consensus disorder prediction 126 149 - -
Pral4816g00030 853 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 177 197 IPR000571 GO:0046872
Pral4816g00030 853 Pfam CCCH-type zinc finger 301 321 IPR041367 -
Pral4816g00030 853 MobiDBLite consensus disorder prediction 28 43 - -
Pral4816g00030 853 ProSiteProfiles Zinc finger C3H1-type profile. 232 259 IPR000571 GO:0046872
Pral4816g00030 853 MobiDBLite consensus disorder prediction 257 298 - -
Pral4816g00030 853 Pfam RNA-binding, Nab2-type zinc finger 238 256 - -
Pral4816g00030 853 MobiDBLite consensus disorder prediction 683 697 - -
Pral4816g00030 853 Gene3D - 175 260 - -
Pral4816g00030 853 ProSiteProfiles Zinc finger C3H1-type profile. 296 323 IPR000571 GO:0046872
Pral4816g00030 853 Gene3D - 295 350 - -
Pral4816g00030 853 MobiDBLite consensus disorder prediction 203 219 - -
Pral4816g00030 853 MobiDBLite consensus disorder prediction 321 371 - -
Pral4816g00030 853 MobiDBLite consensus disorder prediction 203 229 - -
Pral4816g00030 853 MobiDBLite consensus disorder prediction 45 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4816g00030 Pral-Chr4816 115365 122442 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral4816g00030 zf-CCCH 5.4e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4816g00030 - K22909 gmx:100783856 992.26