Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4816g00029 ATGAGTGGAAGTGGCAGAAGGCGGTCCTCAAAGTGGGATTTAAGAGATGAACCTGAGTTTGTATCGGACAGTAAGCAGTTGCGATCTGGGTGGTCCTCTGCCAATGTTACTGGTAGCAATAGTTCGAAATGGTCTTATTTGGAAGGGAATGAGAAGCTAAAACCTAATTCACGATTACCATTCAAGGAACCTTTTTCTGGAGGCAGAGTTTCTAATAAGGATGATATCATGAATAAAGAATATAATAGGGATTTGGATACCAAAATGGCTTGGGACGCAGATGAAAGCTATGGAATGAAAATGTCTCCAGGGTTGGAGGAATGGAAACGTAAGAGGCGCAGTCATTCCCCAAAAAATGGTTTGGACAGGAGTAGGAGCCGGAGCCGGAGCCGGAGCCCTGGCCATTGTTTTAGGTGGGAATCAGGAGTCAATGAAAGAAATAGAATGAGAGCTGGAGGATTGCCACAACCATGTAGAGATTTTGCTGTTGGAAAATGCAGAAGAGGCAGCCGTTGCCATTTTCTTCACCATGATGATCGAAATTATGAGGATGGCTGGGACAGTAGAAGCAGGAAAGATGGACCTCCCAGATATTCCACTCCCTATGAAAGCAGGGACTATTCTGCCAGGAGTGGAAGATCTAATGAGACCTGTATCAATTTTGCGCAAGGCAAATGTAGAATGGGAGCATCTTGCAAGTACGTGCATCATAGCAATTCTGATGATATGAGCAAAGGAAATGTAGATGACTCAACTAGAGAGAGGGAATTTGATCAAAGGCACAGAGAGAGTTCTTTTGAGCGTGGTGGTGGGCATGAGCCAAACCGTTTTAGTGATACTCCCTGCAAATTTTATGCAGCAGGAAATTGTCGCAATGGTAAATATTGCAGGTTTTCTCATGATAGGCGGGCATCTAGAAGCCCCAATCGAAGATTAAGAGATGACAGATGGGGGAATAATCCAGGTGGAGATCAGACATTGGATAGGCCAAGAGGGAGTAACCCAGTCAGTCCTAGTAGAAGGCTGAGAGATGATAGATGGGGTCCAGATGGTAACATGGTTGACATGGATAAGGTGTGGGATGGTCCAAAACTGAATGATGCTGTCGCTGTCTCAGATGCAGCAAAGCTGGGTGAAGATAAGAGTGGAAATATGGGTATACCCGAACCTGGATTCGCTACTTGGCCCAGGACTGATGGATGGAATGGTAATTTAGATAACAACAAAGTGTATGCTGAGCCACCGTTTGTGGGTGACAAGAAGAAAGAAGATCAATGGAAGAAAGAAAATGCTGGTGTTACCATGGGTGCTCCCCAATCAATTGGGACTGACAAATGGCTTGTTGATGCAGAAATGTCTCCTGATTGGAATTATGGGAGTGGATCTTCTGCGCATATTGAAGACAAGAGCGGGCAGAATAAACTTGGTTTGACCCAGGGTGGTGCGTATTCAGCTGCCTCTGAACATCACAGGTTACAAGTTGCTCCAGGACTCAATCAGAACTCACAGAATGAAAATGCTTTGCGTCCTTCTAGCTGTAATGTGGCTGGACAAAGTCAAGGGGCAGTCCCTCTTGTTCCTCCACTTGGAGGGATAGCTGAAGTTATACAGAACCAAGCGTCTTCTGTAAAAAAGTACAGTGGCGAACCAAATATCATGGATGCAAGCTTATCACATGTTAATACGATAAATACTGCTCAAAACATGGTGAGCAATGAACAGCTTGCTCAACTTAGCAGCCTCTCAGCCTCTCTGGTTCAATTCCTGGGAACAGGTCAGCAACTTCCGCAAATTTATGCTGCTCTAAATTCTCATGACGTGAAAAACATATCCTCCCTAGCCAACGCTGAAGCGTCTGGGGAGCCTGTTTCCAGTGCATACATCAAGCCTGATCCTGTTATTGGATCCCGGAAGCTGTATGATCCAGTGAGTGACGGTATGGAGCCAAAGGATACTGATGCTGGTGGAATCACGCCTGCCTTTTCTCCTAGTAAAACAATTGCTGATAGTTCAGGGAGACAACATCCTGGTGATTCTTGTAAAACCTCAGAAGAACAAATTGTCAAGAGTGAACATTTAATTCTATCGCAGCCTGGTCAAAAAGTTGAAGCCAATAAGGCAAACAATGAAGTGGCATCTGAGGAAAGGCAAGATTCTCGAGCAGATGATAGAAATGCAAAAGATAACGGTCCTTCAGAAAATTTGGACCAAAATGGGCCTGATGAGGCAAAGAAGACGAAGGATGTGAAGGGGATTCGTGCTTTTAAATTTGCTCTGGTTGAGTTTGTTAAAGAGCTTCTGAAACCAACATGGAAAGAAGGTCATATCAACAAAGAACATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACTGGTACTATGCAGGGGGCTCATATCCCTCAGACACAAGAAAAAATTGATCACTATCTGTCAGTTTCAAAACCAAAGCTTAACAAACTTGTACAGGCATATGTTGAAAAGGTTCAGAAGGCTTAG 2502 0.4396 MSGSGRRRSSKWDLRDEPEFVSDSKQLRSGWSSANVTGSNSSKWSYLEGNEKLKPNSRLPFKEPFSGGRVSNKDDIMNKEYNRDLDTKMAWDADESYGMKMSPGLEEWKRKRRSHSPKNGLDRSRSRSRSRSPGHCFRWESGVNERNRMRAGGLPQPCRDFAVGKCRRGSRCHFLHHDDRNYEDGWDSRSRKDGPPRYSTPYESRDYSARSGRSNETCINFAQGKCRMGASCKYVHHSNSDDMSKGNVDDSTREREFDQRHRESSFERGGGHEPNRFSDTPCKFYAAGNCRNGKYCRFSHDRRASRSPNRRLRDDRWGNNPGGDQTLDRPRGSNPVSPSRRLRDDRWGPDGNMVDMDKVWDGPKLNDAVAVSDAAKLGEDKSGNMGIPEPGFATWPRTDGWNGNLDNNKVYAEPPFVGDKKKEDQWKKENAGVTMGAPQSIGTDKWLVDAEMSPDWNYGSGSSAHIEDKSGQNKLGLTQGGAYSAASEHHRLQVAPGLNQNSQNENALRPSSCNVAGQSQGAVPLVPPLGGIAEVIQNQASSVKKYSGEPNIMDASLSHVNTINTAQNMVSNEQLAQLSSLSASLVQFLGTGQQLPQIYAALNSHDVKNISSLANAEASGEPVSSAYIKPDPVIGSRKLYDPVSDGMEPKDTDAGGITPAFSPSKTIADSSGRQHPGDSCKTSEEQIVKSEHLILSQPGQKVEANKANNEVASEERQDSRADDRNAKDNGPSENLDQNGPDEAKKTKDVKGIRAFKFALVEFVKELLKPTWKEGHINKEHYKTIVKKVVDKVTGTMQGAHIPQTQEKIDHYLSVSKPKLNKLVQAYVEKVQKA 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4816g00029 833 MobiDBLite consensus disorder prediction 1 74 - -
Pral4816g00029 833 Pfam CCCH-type zinc finger 281 301 IPR041367 -
Pral4816g00029 833 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 832 - -
Pral4816g00029 833 ProSiteProfiles Zinc finger C3H1-type profile. 276 303 IPR000571 GO:0046872
Pral4816g00029 833 MobiDBLite consensus disorder prediction 8 23 - -
Pral4816g00029 833 MobiDBLite consensus disorder prediction 237 278 - -
Pral4816g00029 833 ProSiteProfiles Zinc finger C3H1-type profile. 152 179 IPR000571 GO:0046872
Pral4816g00029 833 MobiDBLite consensus disorder prediction 183 199 - -
Pral4816g00029 833 MobiDBLite consensus disorder prediction 301 351 - -
Pral4816g00029 833 MobiDBLite consensus disorder prediction 25 47 - -
Pral4816g00029 833 MobiDBLite consensus disorder prediction 183 209 - -
Pral4816g00029 833 ProSiteProfiles Zinc finger C3H1-type profile. 212 239 IPR000571 GO:0046872
Pral4816g00029 833 MobiDBLite consensus disorder prediction 238 274 - -
Pral4816g00029 833 Pfam RNA-binding, Nab2-type zinc finger 218 236 - -
Pral4816g00029 833 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 157 177 IPR000571 GO:0046872
Pral4816g00029 833 MobiDBLite consensus disorder prediction 301 318 - -
Pral4816g00029 833 SMART c3hfinal6 213 238 IPR000571 GO:0046872
Pral4816g00029 833 SMART c3hfinal6 154 178 IPR000571 GO:0046872
Pral4816g00029 833 SMART c3hfinal6 276 302 IPR000571 GO:0046872
Pral4816g00029 833 MobiDBLite consensus disorder prediction 663 677 - -
Pral4816g00029 833 MobiDBLite consensus disorder prediction 708 730 - -
Pral4816g00029 833 SUPERFAMILY CCCH zinc finger 279 301 IPR036855 GO:0046872
Pral4816g00029 833 MobiDBLite consensus disorder prediction 106 129 - -
Pral4816g00029 833 MobiDBLite consensus disorder prediction 639 747 - -
Pral4816g00029 833 MobiDBLite consensus disorder prediction 106 138 - -
Pral4816g00029 833 Gene3D - 155 242 - -
Pral4816g00029 833 Gene3D - 275 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4816g00029 Pral-Chr4816 115364 122442 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral4816g00029 zf-CCCH 5.3e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4816g00029 - K22909 gmx:100783856 992.26