Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4816g00027 ATGATAAGGCATTTTTTGTTATTAGTTGTCAGCTGTTTTCTTTCCAATAACATGTTTTCTTGCTTTGGTGAACCAAAAAAGAAAAAACTTGAAAGAAAAATCGGTTCAGATTCCTGGTTTTTGGTGATTTATACGTTGATGTTTCTAATCCAGCACACTGCATTAATCAGAGGACAGCGACAAGTCTCTAGGAGTGGAATGAGTGGAAGTGGCAGAAGGCGGTCCTCAAAGTGGGATTTAAGAGATGAACCTGAGTTTGTATCGGACAGTAAGCAGTTGCGATCTGGGTGGTCCTCTGCCAATGTTACTGGTAGCAATAGTTCGAAATGGTCTTATTTGGAAGGGAATGAGAAGCTAAAACCTAATTCACGATTACCATTCAAGGAACCTTTTTCTGGAGGCAGAGTTTCTAATAAGGATGATATCATGAATAAAGAATATAATAGGGATTTGGATACCAAAATGGCTTGGGACGCAGATGAAAGCTATGGAATGAAAATGTCTCCAGGGTTGGAGGAATGGAAACGTAAGAGGCGCAGTCATTCCCCAAAAAATGGTTTGGACAGGAGCCGGAGCCGGAGCCGGAGCCCTGGCCATTGTTTTAGGTGGGAATCAGGAGTCAATGAAAGAAATAGAATGAGAGCTGGAGGATTGCCACAACCATGTAGAGATTTTGCTGTTGGAAAATGCAGAAGAGGCAGCCGTTGCCATTTTCTTCACCATGATGATCGAAATTATGAGGATGGCTGGGACAGTAGAAGCAGGAAAGATGGACCTCCCAGATATTCCACTCCCTATGAAAGCAGGGACTATTCTGCCAGGAGTGGAAGATCTAATGAGACCTGTATCAATTTTGCGCAAGGCAAATGTAGAATGGGAGCATCTTGCAAGTACGTGCATCATAGCAATTCTGATGATATGAGCAAAGGAAATGTAGATGACTCAACTAGAGAGAGGGAATTTGATCAAAGGCACAGAGAGAGTTCTTTTGAGCGTGGTGGTGGGCATGAGCCAAACCGTTTTAGTGATACTCCCTGCAAATTTTATGCAGCAGGAAATTGTCGCAATGGTAAATATTGCAGGTTTTCTCATGATAGGCGGGCATCTAGAAGCCCCAATCGAAGATTAAGAGATGACAGATGGGGGAATAATCCAGGTGGAGATCAGACATTGGATAGGCCAAGAGGGAGTAACCCAGTCAGTCCTAGTAGAAGGCTGAGAGATGATAGATGGGGTCCAGATGGTAACATGGTTGACATGGATAAGGTGTGGGATGGTCCAAAACTGAATGATGCTGTCGCTGTCTCAGATGCAGCAAAGCTGGGTGAAGATAAGAGTGGAAATATGGGTATACCCGAACCTGGATTCGCTACTTGGCCCAGGACTGATGGATGGAATGGTAATTTAGATAACAACAAAGTGTATGCTGAGCCACCGTTTGTGGGTGACAAGAAGAAAGAAGATCAATGGAAGAAAGAAAATGCTGGTGTTACCATGGGTGCTCCCCAATCAATTGGGACTGACAAATGGCTTGTTGATGCAGAAATGTCTCCTGATTGGAATTATGGGAGTGGATCTTCTGCGCATATTGAAGACAAGAGCGGGCAGAATAAACTTGGTTTGACCCAGGGTGGTGCGTATTCAGCTGCCTCTGAACATCACAGGTTACAAGTTGCTCCAGGACTCAATCAGAACTCACAGAATGAAAATGCTTTGCGTCCTTCTAGCTGTAATGTGGCTGGACAAAGTCAAGGGGCAGTCCCTCTTGTTCCTCCACTTGGAGGGATAGCTGAAGTTATACAGAACCAAGCGTCTTCTGTAAAAAAGTACAGTGGCGAACCAAATATCATGGATGCAAGCTTATCACATGTTAATACGATAAATACTGCTCAAAACATGGTGAGCAATGAACAGCTTGCTCAACTTAGCAGCCTCTCAGCCTCTCTGGTTCAATTCCTGGGAACAGGTCAGCAACTTCCGCAAATTTATGCTGCTCTAAATTCTCATGACGTGAAAAACATATCCTCCCTAGCCAACGCTGAAGCGTCTGGGGAGCCTGTTTCCAGTGCATACATCAAGCCTGATCCTGTTATTGGATCCCGGAAGCTGTATGATCCAGTGAGTGACGGTATGGAGCCAAAGGATACTGATGCTGGTGGAATCACGCCTGCCTTTTCTCCTAGTAAAACAATTGCTGATAGTTCAGGGAGACAACATCCTGGTGATTCTTGTAAAACCTCAGAAGAACAAATTGTCAAGAGTGAACATTTAATTCTATCGCAGCCTGGTCAAAAAGTTGAAGCCAATAAGGCAAACAATGAAGTGGCATCTGAGGAAAGGCAAGATTCTCGAGCAGATGATAGAAATGCAAAAGATAACGGTCCTTCAGAAAATTTGGACCAAAATGGGCCTGATGAGGCAAAGAAGACGAAGGATGTGAAGGGGATTCGTGCTTTTAAATTTGCTCTGGTTGAGTTTGTTAAAGAGCTTCTGAAACCAACATGGAAAGAAGGTCATATCAACAAAGAACATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACTGGTACTATGCAGGGGGCTCATATCCCTCAGACACAAGAAAAAATTGATCACTATCTGTCAGTTTCAAAACCAAAGCTTAACAAACTTGTACAGGCATATGTTGAAAAGGTTCAGAAGGCTTAG 2694 0.4332 MIRHFLLLVVSCFLSNNMFSCFGEPKKKKLERKIGSDSWFLVIYTLMFLIQHTALIRGQRQVSRSGMSGSGRRRSSKWDLRDEPEFVSDSKQLRSGWSSANVTGSNSSKWSYLEGNEKLKPNSRLPFKEPFSGGRVSNKDDIMNKEYNRDLDTKMAWDADESYGMKMSPGLEEWKRKRRSHSPKNGLDRSRSRSRSPGHCFRWESGVNERNRMRAGGLPQPCRDFAVGKCRRGSRCHFLHHDDRNYEDGWDSRSRKDGPPRYSTPYESRDYSARSGRSNETCINFAQGKCRMGASCKYVHHSNSDDMSKGNVDDSTREREFDQRHRESSFERGGGHEPNRFSDTPCKFYAAGNCRNGKYCRFSHDRRASRSPNRRLRDDRWGNNPGGDQTLDRPRGSNPVSPSRRLRDDRWGPDGNMVDMDKVWDGPKLNDAVAVSDAAKLGEDKSGNMGIPEPGFATWPRTDGWNGNLDNNKVYAEPPFVGDKKKEDQWKKENAGVTMGAPQSIGTDKWLVDAEMSPDWNYGSGSSAHIEDKSGQNKLGLTQGGAYSAASEHHRLQVAPGLNQNSQNENALRPSSCNVAGQSQGAVPLVPPLGGIAEVIQNQASSVKKYSGEPNIMDASLSHVNTINTAQNMVSNEQLAQLSSLSASLVQFLGTGQQLPQIYAALNSHDVKNISSLANAEASGEPVSSAYIKPDPVIGSRKLYDPVSDGMEPKDTDAGGITPAFSPSKTIADSSGRQHPGDSCKTSEEQIVKSEHLILSQPGQKVEANKANNEVASEERQDSRADDRNAKDNGPSENLDQNGPDEAKKTKDVKGIRAFKFALVEFVKELLKPTWKEGHINKEHYKTIVKKVVDKVTGTMQGAHIPQTQEKIDHYLSVSKPKLNKLVQAYVEKVQKA 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4816g00027 897 Gene3D - 339 394 - -
Pral4816g00027 897 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 67 896 - -
Pral4816g00027 897 ProSiteProfiles Zinc finger C3H1-type profile. 216 243 IPR000571 GO:0046872
Pral4816g00027 897 MobiDBLite consensus disorder prediction 172 202 - -
Pral4816g00027 897 ProSiteProfiles Zinc finger C3H1-type profile. 276 303 IPR000571 GO:0046872
Pral4816g00027 897 MobiDBLite consensus disorder prediction 61 80 - -
Pral4816g00027 897 MobiDBLite consensus disorder prediction 247 274 - -
Pral4816g00027 897 Pfam CCCH-type zinc finger 345 365 IPR041367 -
Pral4816g00027 897 MobiDBLite consensus disorder prediction 365 382 - -
Pral4816g00027 897 MobiDBLite consensus disorder prediction 703 811 - -
Pral4816g00027 897 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 221 241 IPR000571 GO:0046872
Pral4816g00027 897 Gene3D - 219 304 - -
Pral4816g00027 897 Pfam RNA-binding, Nab2-type zinc finger 282 300 - -
Pral4816g00027 897 ProSiteProfiles Zinc finger C3H1-type profile. 340 367 IPR000571 GO:0046872
Pral4816g00027 897 MobiDBLite consensus disorder prediction 301 342 - -
Pral4816g00027 897 MobiDBLite consensus disorder prediction 727 741 - -
Pral4816g00027 897 MobiDBLite consensus disorder prediction 772 794 - -
Pral4816g00027 897 MobiDBLite consensus disorder prediction 172 198 - -
Pral4816g00027 897 SMART c3hfinal6 218 242 IPR000571 GO:0046872
Pral4816g00027 897 SMART c3hfinal6 340 366 IPR000571 GO:0046872
Pral4816g00027 897 SMART c3hfinal6 277 302 IPR000571 GO:0046872
Pral4816g00027 897 MobiDBLite consensus disorder prediction 247 263 - -
Pral4816g00027 897 MobiDBLite consensus disorder prediction 302 338 - -
Pral4816g00027 897 SUPERFAMILY CCCH zinc finger 343 365 IPR036855 GO:0046872
Pral4816g00027 897 MobiDBLite consensus disorder prediction 365 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4816g00027 Pral-Chr4816 115364 122442 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral4816g00027 zf-CCCH 5.8e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4816g00027 - K22909 gmx:100783856 991.875