Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4816g00026 ATGATAAGGCATTTTTTGTTATTAGTTGTCAGCTGTTTTCTTTCCAATAACATGTTTTCTTGCTTTGGTGAACCAAAAAAGAAAAAACTTGAAAGAAAAATCGGTTCAGATTCCTGGTTTTTGGTGATTTATACGTTGATGTTTCTAATCCAGCACACTGCATTAATCAGAGGACAGCGACAAGTCTCTAGGAGTGGAATGAGTGGAAGTGGCAGAAGGCGGTCCTCAAAGTGGGATTTAAGAGATGAACCTGAGTTTGTATCGGACAGTAAGCAGTTGCGATCTGGGTGGTCCTCTGCCAATGTTACTGGTAGCAATAGTTCGAAATGGTCTTATTTGGAAGGGAATGAGAAGCTAAAACCTAATTCACGATTACCATTCAAGGAACCTTTTTCTGGAGGCAGAGTTTCTAATAAGGATGATATCATGAATAAAGAATATAATAGGGATTTGGATACCAAAATGGCTTGGGACGCAGATGAAAGCTATGGAATGAAAATGTCTCCAGGGTTGGAGGAATGGAAACGTAAGAGGCGCAGTCATTCCCCAAAAAATGGTTTGGACAGGAGTAGGAGCCGGAGCCGGAGCCGGAGCCCTGGCCATTGTTTTAGGTGGGAATCAGGAGTCAATGAAAGAAATAGAATGAGAGCTGGAGGATTGCCACAACCATGTAGAGATTTTGCTGTTGGAAAATGCAGAAGAGGCAGCCGTTGCCATTTTCTTCACCATGATGATCGAAATTATGAGGATGGCTGGGACAGTAGAAGCAGGAAAGATGGACCTCCCAGATATTCCACTCCCTATGAAAGCAGGGACTATTCTGCCAGGAGTGGAAGATCTAATGAGACCTGTATCAATTTTGCGCAAGGCAAATGTAGAATGGGAGCATCTTGCAAGTACGTGCATCATAGCAATTCTGATGATATGAGCAAAGGAAATGTAGATGACTCAACTAGAGAGAGGGAATTTGATCAAAGGCACAGAGAGAGTTCTTTTGAGCGTGGTGGTGGGCATGAGCCAAACCGTTTTAGTGATACTCCCTGCAAATTTTATGCAGCAGGAAATTGTCGCAATGGTAAATATTGCAGGTTTTCTCATGATAGGCGGGCATCTAGAAGCCCCAATCGAAGATTAAGAGATGACAGATGGGGGAATAATCCAGGTGGAGATCAGACATTGGATAGGCCAAGAGGGAGTAACCCAGTCAGTCCTAGTAGAAGGCTGAGAGATGATAGATGGGGTCCAGATGGTAACATGGTTGACATGGATAAGGTGTGGGATGGTCCAAAACTGAATGATGCTGTCGCTGTCTCAGATGCAGCAAAGCTGGGTGAAGATAAGAGTGGAAATATGGGTATACCCGAACCTGGATTCGCTACTTGGCCCAGGACTGATGGATGGAATGGTAATTTAGATAACAACAAAGTGTATGCTGAGCCACCGTTTGTGGGTGACAAGAAGAAAGAAGATCAATGGAAGAAAGAAAATGCTGGTGTTACCATGGGTGCTCCCCAATCAATTGGGACTGACAAATGGCTTGTTGATGCAGAAATGTCTCCTGATTGGAATTATGGGAGTGGATCTTCTGCGCATATTGAAGACAAGAGCGGGCAGAATAAACTTGGTTTGACCCAGGGTGGTGCGTATTCAGCTGCCTCTGAACATCACAGGTTACAAGTTGCTCCAGGACTCAATCAGAACTCACAGAATGAAAATGCTTTGCGTCCTTCTAGCTGTAATGTGGCTGGACAAAGTCAAGGGGCAGTCCCTCTTGTTCCTCCACTTGGAGGGATAGCTGAAGTTATACAGAACCAAGCGTCTTCTGTAAAAAAGTACAGTGGCGAACCAAATATCATGGATGCAAGCTTATCACATGTTAATACGATAAATACTGCTCAAAACATGGTGAGCAATGAACAGCTTGCTCAACTTAGCAGCCTCTCAGCCTCTCTGGTTCAATTCCTGGGAACAGGTCAGCAACTTCCGCAAATTTATGCTGCTCTAAATTCTCATGACGTGAAAAACATATCCTCCCTAGCCAACGCTGAAGCGTCTGGGGAGCCTGTTTCCAGTGCATACATCAAGCCTGATCCTGTTATTGGATCCCGGAAGCTGTATGATCCAGTGAGTGACGGTATGGAGCCAAAGGATACTGATGCTGGTGGAATCACGCCTGCCTTTTCTCCTAGTAAAACAATTGCTGATAGTTCAGGGAGACAACATCCTGGTGATTCTTGTAAAACCTCAGAAGAACAAATTGTCAAGAGTGAACATTTAATTCTATCGCAGCCTGGTCAAAAAGTTGAAGCCAATAAGGCAAACAATGAAGTGGCATCTGAGGAAAGGCAAGATTCTCGAGCAGATGATAGAAATGCAAAAGATAACGGTCCTTCAGAAAATTTGGACCAAAATGGGCCTGATGAGGCAAAGAAGACGAAGGATGTGAAGGGGATTCGTGCTTTTAAATTTGCTCTGGTTGAGTTTGTTAAAGAGCTTCTGAAACCAACATGGAAAGAAGGTCATATCAACAAAGAACATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACTGGTACTATGCAGGGGGCTCATATCCCTCAGACACAAGAAAAAATTGATCACTATCTGTCAGTTTCAAAACCAAAGCTTAACAAACTTGTACAGGCATATGTTGAAAAGGTTCAGAAGGCTTAG 2700 0.4333 MIRHFLLLVVSCFLSNNMFSCFGEPKKKKLERKIGSDSWFLVIYTLMFLIQHTALIRGQRQVSRSGMSGSGRRRSSKWDLRDEPEFVSDSKQLRSGWSSANVTGSNSSKWSYLEGNEKLKPNSRLPFKEPFSGGRVSNKDDIMNKEYNRDLDTKMAWDADESYGMKMSPGLEEWKRKRRSHSPKNGLDRSRSRSRSRSPGHCFRWESGVNERNRMRAGGLPQPCRDFAVGKCRRGSRCHFLHHDDRNYEDGWDSRSRKDGPPRYSTPYESRDYSARSGRSNETCINFAQGKCRMGASCKYVHHSNSDDMSKGNVDDSTREREFDQRHRESSFERGGGHEPNRFSDTPCKFYAAGNCRNGKYCRFSHDRRASRSPNRRLRDDRWGNNPGGDQTLDRPRGSNPVSPSRRLRDDRWGPDGNMVDMDKVWDGPKLNDAVAVSDAAKLGEDKSGNMGIPEPGFATWPRTDGWNGNLDNNKVYAEPPFVGDKKKEDQWKKENAGVTMGAPQSIGTDKWLVDAEMSPDWNYGSGSSAHIEDKSGQNKLGLTQGGAYSAASEHHRLQVAPGLNQNSQNENALRPSSCNVAGQSQGAVPLVPPLGGIAEVIQNQASSVKKYSGEPNIMDASLSHVNTINTAQNMVSNEQLAQLSSLSASLVQFLGTGQQLPQIYAALNSHDVKNISSLANAEASGEPVSSAYIKPDPVIGSRKLYDPVSDGMEPKDTDAGGITPAFSPSKTIADSSGRQHPGDSCKTSEEQIVKSEHLILSQPGQKVEANKANNEVASEERQDSRADDRNAKDNGPSENLDQNGPDEAKKTKDVKGIRAFKFALVEFVKELLKPTWKEGHINKEHYKTIVKKVVDKVTGTMQGAHIPQTQEKIDHYLSVSKPKLNKLVQAYVEKVQKA 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4816g00026 899 MobiDBLite consensus disorder prediction 303 344 - -
Pral4816g00026 899 MobiDBLite consensus disorder prediction 729 743 - -
Pral4816g00026 899 Pfam RNA-binding, Nab2-type zinc finger 284 302 - -
Pral4816g00026 899 MobiDBLite consensus disorder prediction 774 796 - -
Pral4816g00026 899 MobiDBLite consensus disorder prediction 61 80 - -
Pral4816g00026 899 MobiDBLite consensus disorder prediction 172 204 - -
Pral4816g00026 899 ProSiteProfiles Zinc finger C3H1-type profile. 342 369 IPR000571 GO:0046872
Pral4816g00026 899 MobiDBLite consensus disorder prediction 249 275 - -
Pral4816g00026 899 SMART c3hfinal6 279 304 IPR000571 GO:0046872
Pral4816g00026 899 SMART c3hfinal6 342 368 IPR000571 GO:0046872
Pral4816g00026 899 SMART c3hfinal6 220 244 IPR000571 GO:0046872
Pral4816g00026 899 MobiDBLite consensus disorder prediction 249 265 - -
Pral4816g00026 899 MobiDBLite consensus disorder prediction 304 340 - -
Pral4816g00026 899 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 67 898 - -
Pral4816g00026 899 MobiDBLite consensus disorder prediction 172 195 - -
Pral4816g00026 899 MobiDBLite consensus disorder prediction 367 417 - -
Pral4816g00026 899 Gene3D - 221 306 - -
Pral4816g00026 899 Pfam CCCH-type zinc finger 347 367 IPR041367 -
Pral4816g00026 899 Gene3D - 341 396 - -
Pral4816g00026 899 ProSiteProfiles Zinc finger C3H1-type profile. 218 245 IPR000571 GO:0046872
Pral4816g00026 899 ProSiteProfiles Zinc finger C3H1-type profile. 278 305 IPR000571 GO:0046872
Pral4816g00026 899 MobiDBLite consensus disorder prediction 367 384 - -
Pral4816g00026 899 MobiDBLite consensus disorder prediction 705 813 - -
Pral4816g00026 899 SUPERFAMILY CCCH zinc finger 345 367 IPR036855 GO:0046872
Pral4816g00026 899 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 223 243 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4816g00026 Pral-Chr4816 115364 122442 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral4816g00026 zf-CCCH 5.8e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4816g00026 - K22909 gmx:100783856 992.26