Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4816g00017 ATGCTTAACTCCGATGAAGCAGATATTGAAATATTCTTCGACTCAGCGGATTTTCTGCCACCTCAACACTCTGTTTTAGACGAAGAGTTGGGTAGTAGCAAGTTTGGGTACGAAGTTTGGGTGAATAGGCCTCAAAGTGTGAAGGAAAGACGGCAACGTTTTTTCCAAGAAATGGGGTTTGTTGATTTTTCTTCGAACCTTTGCTCTCAAGAGATTAACGCCTTGGAACTTGAAAGGATAATGGAGAGCGAAGGCGCAGCATCAAGTGCCTTCAGTTCCTCTCCCGAAGAAAACGTCTTGTTTGATGAACGTAACGGAGATGCAAACTTTGAAAGGAAGGTGTGTGAGTCATCTTCTTCAGGTAAAGAGCACAGGCCCGGAGAAGCTGAGGCATCAGAGGAATGTCAATATGGTCCCTTTGATATGGGTAAAAAGAAAATGAAAGGCTGGTGGAAGCTCTTTGTGAAGAGCAGGAAAACAATTGGAGGGAAAGTGCGATCAAAGTTGAAGCGAGAGATGAGTAAAACTCGCAGAATCAATGTAAAGCAGAACAAAAAGAGGTGGATGGAATTGAGTGCCTTGTACTTAGGACAAGAGATCAGAGCTCACGAAGGACTAATCTGGACTATGAAGTTTAGTCCTAATGGTCAGTACGTAGCAAGTGGAGGTGAAGACGGGGTAGTGCGGGTATGGCGTATTATCTCAATGGATACATCCAGCATTTGTTTCGATGCAGAAGACATTAATTCTACCAGCAAAGTGAAACAAGAAATCTCTTGTTCTTGGAGGAAAAAGTCAAATATATCCTTCATGGCGCTTCCGAACAAGGTTCTCCAAATTGAGGAATCACCACTGCAAGAATTCTTTGGTCATATCAGTGACGTCTTGGATTTGGCTTGGTCTGATTCAAATATTCTTTTGTCGTCTTCAATGGACAAAACAGTTCGATTGTGGCAAATTGGTTGTGATCAATGTATGGGTGTCTTCCGTCACAGTGATTATGTGACTTGCATCCAAGCAAACCCAGTTGATAAAAACTACTTCATCAGTGGGTCTATAGATGGCAAAGTCCGAATATGGGGGTTACGTGAAAAGCGAGTTGTAGACTGGGCAGATGTACGAGATGTGATTACGGCTATAAGTTACCACCCAGATGGGAAGGGGTTTGTAGTTGGATCCATCACAGGCGCTTGTCGTTTTTATGTTGCTTCAGGCAAACATTTCCAGCTTGAGGCAGAGATATGGGTTCATGGGAAAAAGAGATCAGCTGGCAACAAGATTACTGGCATTCAGTTCTCACAGAAAAAGCACCAGAGAGTTATGATCACATCAGAAGATTCCAAAATTCGTGTGCTCGATGGTTTCGAACTTGTCCAGAAATTTAAAGGCATTCCCAAGTCAGGAAGCCAGACATGTGGGTCATTTACATCAACAGAAAATCACATCATATCTGTTGGAGAGGACTCCCATGTGTGCATTTGGAATTGCAATGGCTTGGAACATTCGTCATCCAAAGCCATAAAATCTCAGCGTTGCTGTGAGTACTTTTCCACTGAAGGTGTTACTGTGGCCATACCCTGGTTGGTAAATAGTACAGAACATGCAAGTTTGTGCGGCAACTCAGAAATGCAACATCTCCAGGAGGCTCGTCCTAGTGTTAGAGATTCAGAGCGTTTCTCTCTGGGTAATTGGTTCACCATGGAAGGCACCTGCCGGGGTTCAGTGACGTGGCCGGAAGAGAAACTTCCGACTTGGAATTTTCCATTTGCAGAAGACGAGTATGATCCCATAGAGCTTTGCAACAGAGATGCTTGGCATGAGAGAGTTGGATCAGAAACATGGGGACTATCCTTTGTGGTGGCTGGTTTGGATGGAACGATCAAGACATTCCATAACTTTGGATTGCCTGTTAGGCTTTAG 1920 0.4385 MLNSDEADIEIFFDSADFLPPQHSVLDEELGSSKFGYEVWVNRPQSVKERRQRFFQEMGFVDFSSNLCSQEINALELERIMESEGAASSAFSSSPEENVLFDERNGDANFERKVCESSSSGKEHRPGEAEASEECQYGPFDMGKKKMKGWWKLFVKSRKTIGGKVRSKLKREMSKTRRINVKQNKKRWMELSALYLGQEIRAHEGLIWTMKFSPNGQYVASGGEDGVVRVWRIISMDTSSICFDAEDINSTSKVKQEISCSWRKKSNISFMALPNKVLQIEESPLQEFFGHISDVLDLAWSDSNILLSSSMDKTVRLWQIGCDQCMGVFRHSDYVTCIQANPVDKNYFISGSIDGKVRIWGLREKRVVDWADVRDVITAISYHPDGKGFVVGSITGACRFYVASGKHFQLEAEIWVHGKKRSAGNKITGIQFSQKKHQRVMITSEDSKIRVLDGFELVQKFKGIPKSGSQTCGSFTSTENHIISVGEDSHVCIWNCNGLEHSSSKAIKSQRCCEYFSTEGVTVAIPWLVNSTEHASLCGNSEMQHLQEARPSVRDSERFSLGNWFTMEGTCRGSVTWPEEKLPTWNFPFAEDEYDPIELCNRDAWHERVGSETWGLSFVVAGLDGTIKTFHNFGLPVRL 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4816g00017 639 PANTHER WD REPEAT DOMAIN 44 141 636 IPR040324 -
Pral4816g00017 639 SMART WD40_4 281 319 IPR001680 GO:0005515
Pral4816g00017 639 SMART WD40_4 454 495 IPR001680 GO:0005515
Pral4816g00017 639 SMART WD40_4 193 232 IPR001680 GO:0005515
Pral4816g00017 639 SMART WD40_4 407 453 IPR001680 GO:0005515
Pral4816g00017 639 SMART WD40_4 322 361 IPR001680 GO:0005515
Pral4816g00017 639 SMART WD40_4 363 402 IPR001680 GO:0005515
Pral4816g00017 639 ProSiteProfiles Trp-Asp (WD) repeats profile. 328 370 IPR001680 GO:0005515
Pral4816g00017 639 ProSiteProfiles Trp-Asp (WD) repeats profile. 288 320 IPR001680 GO:0005515
Pral4816g00017 639 MobiDBLite consensus disorder prediction 113 131 - -
Pral4816g00017 639 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 288 320 - -
Pral4816g00017 639 SUPERFAMILY WD40 repeat-like 195 498 IPR036322 GO:0005515
Pral4816g00017 639 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 241 IPR001680 GO:0005515
Pral4816g00017 639 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 328 363 - -
Pral4816g00017 639 Gene3D - 186 524 IPR015943 GO:0005515
Pral4816g00017 639 PRINTS G protein beta WD-40 repeat signature 219 233 IPR020472 -
Pral4816g00017 639 PRINTS G protein beta WD-40 repeat signature 306 320 IPR020472 -
Pral4816g00017 639 PRINTS G protein beta WD-40 repeat signature 348 362 IPR020472 -
Pral4816g00017 639 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 233 - -
Pral4816g00017 639 MobiDBLite consensus disorder prediction 113 133 - -
Pral4816g00017 639 Pfam WD domain, G-beta repeat 283 318 IPR001680 GO:0005515
Pral4816g00017 639 Pfam WD domain, G-beta repeat 199 231 IPR001680 GO:0005515
Pral4816g00017 639 Pfam WD domain, G-beta repeat 324 360 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4816g00017 Pral-Chr4816 85010 88299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4816g00017 285 395 U-box Gene Family AT2G33340 31.933 3.34e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4816g00017 K20241 - gmx:100801576 787.719