Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4816g00015 ATGGTGAGAGATGATCTCTGCATCACAATTCCTAGCTTCTTCAGGTGCCCAATATCGCTCGACGTCATGAAATCCCCCGTCAGCCTCTGCACCGGCGTGACGTACGATCGTTCCAGTATCCAACGCTGGCTCGACGACGGCAACAACACCTGCCCCGCCACCATGCAGGTGCTCCAATCCAAGGAATTTGTCCCTAACCTTACTCTCCAGAGGCTTATCCGGATCTGGACTGACTCCGTTCGACGACCGATCGAATCTGCCGGCTCCCCGGCTGCCAAATCAGTCCCGTCCCAGGACCAAGTCGTCGACGCTGTCCGAGATTTGGAAGGCACGAGCGGAAACACTTTGTACTCCCTCGCTGGAATTCTATCCTTTGCCGAAGAATCCGAAGAGAACCGCGAATTCCTCGCCAACATAGCTGGATTGGTACCTTTGCTCGTTGGTTTCCTCGACAATGTCGATGGTGGAATTACTCGGAGCGTTGAATTTCTTGAGAAAGCTGTCAGGGCTTTGGGTTTGGTCATTAATAAAGCAAAAGATGACGAGACATTGAGGCATTCGATTGTGAAGAGCCAGCAAGGCAATTGTTTAGCTTCTCTACTTCTTGTCCTGCAACGAGGCAGCTCTGATTCGAAAATTGCGTCGGCTAAGATTTTGAAATTCGCCGCTATGGACGTGGAATCGAAAATCCTTATCGCTGAAAAGGAAGGCCTAATTCATGAATTGCTTAAAATGACGACATCAGACAAAGATGCGATGCTAATCGAGAACGGCTTATCCTGCTTGGTGGCGATCTCAACGCCGAAACGAAACAAGGCGAGATTAATCCACCTCGGGGCTGTGAAGAAATTATCGGAATTGCTTTCGGAGTCGAAGTGGAGCGTTTCCATCACCGAGAATGTGCTGAAGCTGCTAGAAATGGTGTCGACGACCAAGGAAGGAAGGTTGCAGATTTGCGAGGACCCAACTTGCCTGGCATCGATATTGCAGAAGGTCCTGAAGGTGTCAAATGTCGCAACGGAGCACGCAGTGACTATACTTTGGAGCGTGTGTTATCTATTTCGTGATCAGAAGGCGCAGGAAGCGGTGACGAAGGCGAACGGTTTGACCAAGATTCTGCTCTTGATGCAGAGCAATTGTTCGCCGGGAGTTCGCCAAATGTGTGCCGATTTGCTCAAGATTTTCAGGGTTAACTCCAAATCATGCCTCTCTTGCTACCACACCAAGACCACCCATATAATGCCCTTCTGA 1251 0.5004 MVRDDLCITIPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDDGNNTCPATMQVLQSKEFVPNLTLQRLIRIWTDSVRRPIESAGSPAAKSVPSQDQVVDAVRDLEGTSGNTLYSLAGILSFAEESEENREFLANIAGLVPLLVGFLDNVDGGITRSVEFLEKAVRALGLVINKAKDDETLRHSIVKSQQGNCLASLLLVLQRGSSDSKIASAKILKFAAMDVESKILIAEKEGLIHELLKMTTSDKDAMLIENGLSCLVAISTPKRNKARLIHLGAVKKLSELLSESKWSVSITENVLKLLEMVSTTKEGRLQICEDPTCLASILQKVLKVSNVATEHAVTILWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPGVRQMCADLLKIFRVNSKSCLSCYHTKTTHIMPF 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4816g00015 416 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Pral4816g00015 416 PANTHER WDSAM1 PROTEIN 9 404 IPR045185 GO:0061630
Pral4816g00015 416 SUPERFAMILY ARM repeat 119 398 IPR016024 -
Pral4816g00015 416 SUPERFAMILY RING/U-box 6 79 - -
Pral4816g00015 416 Gene3D - 88 216 IPR011989 -
Pral4816g00015 416 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Pral4816g00015 416 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Pral4816g00015 416 Gene3D - 217 402 IPR011989 -
Pral4816g00015 416 CDD RING-Ubox_PUB 11 63 IPR045210 -
Pral4816g00015 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 81 IPR013083 -
Pral4816g00015 416 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4816g00015 Pral-Chr4816 73726 75337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4816g00015 1 416 U-box Gene Family AT5G64660 53.756 1.38e-145 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4816g00015 - - qsa:O6P43_023349 568.155