Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4816g00007 ATGTATGCTTCCTCTTTCTCTAGCTCGCTGCTTCTCCAGGATCTTCTTGGGGATTTCCATTCAAGAAGGCTGCTCCTTCTACACAACCCACTTAACTTACAGGCCAACCCTCCGGCGTCCTCAAACACCCACAATTCCACAGACCACTACCTTGGAAATGGCAATTTTGATGCGAATGTTGTCATGGTGCTCTCGGTGTTGTTGTGTGCTCTTATTTGCTCTCTGGGGTTGAACTCCATCATAAGGTGTGCCCTGAGGTGTTCCAATCTCGTGGTCAACGTCGAGTCCGCCGGCACCAACCCTCCGGCTCGATTGGCCAACACTGGAGTGAAGAAGAAAGCTCTCAAGACTTTCCCCACTGTGAACTACTCCGCCGAGCTGAAGCTTCCGGGTTTGGACACAGAGTGCGCGATATGCTTGTCAGAGTTCACCAGTGGCGAACGAGTCAGAATTTTGCCAAAGTGCAACCATGGCTTCCATGTCAAATGCATTGACAAGTGGCTGAGCTCCCACTCGTCTTGTCCGAAGTGCAGACAGTGCCTAATTCAAACCTGCCAGAAGATTGTTGGATGCACCACCCAGGCTAGCTCGTCCCAACCACCTGAAACCATTCTCAGGATTGCGCCTCTGGAGCCAGAAGGGTTGGTCCGTGACTACAGGGAAGTAGGCGCTTAA 675 0.5185 MYASSFSSSLLLQDLLGDFHSRRLLLLHNPLNLQANPPASSNTHNSTDHYLGNGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNLVVNVESAGTNPPARLANTGVKKKALKTFPTVNYSAELKLPGLDTECAICLSEFTSGERVRILPKCNHGFHVKCIDKWLSSHSSCPKCRQCLIQTCQKIVGCTTQASSSQPPETILRIAPLEPEGLVRDYREVGA 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4816g00007 224 PANTHER RING-H2 FINGER PROTEIN ATL78 14 215 IPR044602 GO:0016567|GO:0016740
Pral4816g00007 224 FunFam RING-H2 finger protein ATL73 98 183 - -
Pral4816g00007 224 CDD RING-H2_EL5-like 135 178 - -
Pral4816g00007 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 183 IPR013083 -
Pral4816g00007 224 SMART ring_2 136 177 IPR001841 -
Pral4816g00007 224 SUPERFAMILY RING/U-box 114 183 - -
Pral4816g00007 224 Pfam Ring finger domain 135 178 IPR001841 -
Pral4816g00007 224 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4816g00007 Pral-Chr4816 34159 35005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4816g00007 34 182 C3H Transcription Factor Family AT3G10910 48.387 2.21e-42 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4816g00007 K19040 - qsa:O6P43_023336 318.161