Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4816g00005 ATGCTGGAAAACTCAACCTCATCGGAAAATACCGCAGCTCCCGTCCAGAACCGCCCCTCAGAGGACGGAGGTGGTAGCGGGCCTGACTCCGATGGCCTCAAAGAGCAGCGGGGGATCGTCGACCAGGAAGTTGACAGGAATTCCGCCGGTCACCGGTGGCCCCGAGAAGAGACACTGGCTTTGCTCAAGATAAGGTCTGAGATGGACATTGCTTTCAGGGACATGAGCCCCAAAGGTCCTCTTTGGCAACAGGTTTCGAGGAGATTGGCGGAGCTGGGATACCACAGGAGCGCAAAGAAATGTAAGGAGAAGTTCGAAAACATCTACAAGTACCACAGAAGGACCAAGGAAGGCCGTTGTGGCCGGCCCAACCGCAAGACCTATCGTTTCTTTGAGCAACTCGAAGCTCTTGACGCCCACCTACTCCTTCCACCTCCAACTTCAACAGAAAAGGACGACACGCCAAATACAACAACCTCCCTGGATGTTGTTCAACACGCCGTGCCCTGCTCTACTCTTTTCCCTAATGCAAATAGCAATTCCATCACTTCTTCTTCTAATGAAGAATCTGAGGATGCGCCGAAAAAGAAGGGCAAACTAACTAAGTTTTTCCAGGGATTGATGAAGGAAGTAATAGAGAAGCAAGAGGCTCTCCAAAAGAATTTAATGGAGGTTCTGGAAAAATGTGAGCAAGATCGAATTGCAAGGGAGGAAACATGGAGGGCGCAAGAACTAGCTCGGCTTGACAGGGAGCGTGAGCTCTTGGCTCAAGAAAGATCCACTGCCGCCGCCAAGGATGCCGCCTTGCTTGCCTTTCTGAAGAAGATAGCAGAACAATCAGCGTGCCCGGTGCAGCTGCCGGACAATGTTCCGGTTGACCGGAACCTCATTCCAGACGATATAGATAAGAACAAACAAGAAAAAGTCAACGGACGTTGTACTGTTAGCGTTACGGATAAGCAAGAATGTGGAAGTGTGGGAAATTTCATACAGATGAGCTCCTCCCGTTGGCCTAAAGAAGAAGTGGAAGCTCTGATTAGATTGAGGACGAACCTGGATGTGGAATATGAAGGAAATAATGGGCCTAAGGGATCCCTATGGGAAGAAATCTCTTCGGCAATGAAAAAGCACGGGTACGATCGCAGTGCCAAGAGATGCAAAGAGAAATGGGAGAACATAAACAAGTACTTTAAGAGGATGAAGCAGAAAAATAAGAGGAAGCCTGGGGATTCGAAGACATGCCCATATTTTCAACAGCTAGATGAACTATACAGCAAAAAACCTAGGAAGGCCCAAGAATCAACTGCTTCCGGGAACGAGTTGAAGGCGGAGGAGCTATTAATGCATATTATGAGTGGTCAAGAAGAGCGACAAGCATCTGAAGATGGCGACAGGGAGAAGACGAACCAGATTGAAGGAGATAAGGAAGATGTGGATCATATGGTGGACAATCATACTTCAACAACAATCATGGGTTGA 1479 0.4841 MLENSTSSENTAAPVQNRPSEDGGGSGPDSDGLKEQRGIVDQEVDRNSAGHRWPREETLALLKIRSEMDIAFRDMSPKGPLWQQVSRRLAELGYHRSAKKCKEKFENIYKYHRRTKEGRCGRPNRKTYRFFEQLEALDAHLLLPPPTSTEKDDTPNTTTSLDVVQHAVPCSTLFPNANSNSITSSSNEESEDAPKKKGKLTKFFQGLMKEVIEKQEALQKNLMEVLEKCEQDRIAREETWRAQELARLDRERELLAQERSTAAAKDAALLAFLKKIAEQSACPVQLPDNVPVDRNLIPDDIDKNKQEKVNGRCTVSVTDKQECGSVGNFIQMSSSRWPKEEVEALIRLRTNLDVEYEGNNGPKGSLWEEISSAMKKHGYDRSAKRCKEKWENINKYFKRMKQKNKRKPGDSKTCPYFQQLDELYSKKPRKAQESTASGNELKAEELLMHIMSGQEERQASEDGDREKTNQIEGDKEDVDHMVDNHTSTTIMG 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4816g00005 492 Coils Coil 208 232 - -
Pral4816g00005 492 ProSiteProfiles Myb-like domain profile. 52 109 IPR001005 -
Pral4816g00005 492 SMART sant 333 396 IPR001005 -
Pral4816g00005 492 SMART sant 49 111 IPR001005 -
Pral4816g00005 492 CDD GT1 335 401 - -
Pral4816g00005 492 MobiDBLite consensus disorder prediction 175 197 - -
Pral4816g00005 492 MobiDBLite consensus disorder prediction 1 17 - -
Pral4816g00005 492 MobiDBLite consensus disorder prediction 425 492 - -
Pral4816g00005 492 Pfam Myb/SANT-like DNA-binding domain 335 423 IPR044822 -
Pral4816g00005 492 Pfam Myb/SANT-like DNA-binding domain 51 137 IPR044822 -
Pral4816g00005 492 MobiDBLite consensus disorder prediction 34 51 - -
Pral4816g00005 492 SUPERFAMILY Homeodomain-like 334 400 IPR009057 -
Pral4816g00005 492 MobiDBLite consensus disorder prediction 449 483 - -
Pral4816g00005 492 CDD GT1 52 116 - -
Pral4816g00005 492 MobiDBLite consensus disorder prediction 1 51 - -
Pral4816g00005 492 FunFam Trihelix transcription factor GT-2 53 114 - -
Pral4816g00005 492 Gene3D - 53 114 - -
Pral4816g00005 492 Gene3D - 337 399 - -
Pral4816g00005 492 ProSiteProfiles Myb-like domain profile. 335 394 IPR001005 -
Pral4816g00005 492 FunFam Trihelix transcription factor GT-2 337 399 - -
Pral4816g00005 492 PANTHER FI21293P1 18 472 - -
Pral4816g00005 492 Coils Coil 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4816g00005 Pral-Chr4816 22966 25359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4816g00005 45 424 Trihelix Transcription Factor Family AT1G76880 45.067 3.21e-119 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pral4816g00005 Myb_DNA-bind_4 1e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4816g00005 - - qsa:O6P43_030370 511.531