Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4814g00050 ATGAATTTGGAAGAACCAATGGACTTTGACGAATACGATTACCTGGAGAAGACAGTGGAGGAGCAGGAAGATCGAGATTCGAAGAAGAAGAAGAAGAAGATGAAGGAGAGCAGCGAGAAAGGTGAAAGGAGTTACAGAAAGCTCGAGGTAGATGAGAATCTGGATGGTGAGGAAAATAAGAGCAAGAAGACCAGAGGAGACGAGGAGAATGGGTCAAAGAAGGATCGTGATGACCGCGACAGAGAACGACCTGGCCGCGAAAAGGAGCGCCATAGGAGTGGCAAGGAGAGGGACGAGGAGGGAGAGCGAGAGAGGAGTAATAGAGAGAAGGAGAGAGACAAAGGGATGGATAAGGATAGGGAGAGGGATAGAGAAAGAAGAGACAAAGAGCGGGAGAGGGATGGAGAAAGAGGGAGGGAGAGGGACAAAGAGAGGGAAAGAGAACGGGTGAAAAGGGAGAAGGAGGAGAGAGAGAGGTTCAGGAGAAGCAGAAGTCGTTCTGATAGAGAGAGAGAGAGAGAACGAGAACCGGAAATTAGAGATAGCCGGAGATTCCGAGACAAGAAAGAGGCTGCGGAGCCTGAGGCGGATCCAGAAAGGGATCAGAGAACTGTTTTTGCTTACCAGATGCCCTTAAAGGCCACAGAGAGAGATGTTTATGAATTTTTTTCAAAATCTGGGAAGGTGAGGGATGTCCGTCTCATCATGGATCGGAATTCAAGACGGTCTAAGGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAGTTGCTTCTTGGACAACCTGTAATGGTCAAACCTTCAGAAGCTGAAAAGAACCTTGTTCAGCCTAATGCTTCCACTGGAGCTGCAGGTGTAGCGGGACCATATGGAGCAGTAGACAGGAAACTTTATGTGGGAAACCTTCATTTCAACATGACAGAGAGTCAGCTGAGGGAAATTTTTGAGCCATTTGGTCCGGTGGAGCTTGTGCAACTCCCTACTGACTTGGAGACAGGACATTGCAAGGGTTTTGGCTTTGTTCAATTTGCTCATCTTGAGCATGCCAAAGCAGCCCAGAGTTTAAATGGAAAACTGGAGATTGCTGGTCGGGCTATCAAGATTTCATGTGTGACAGATCATGTTGGAAGCCAAGATACAAATGCGAAAACTGCAGACTTTGATGACGATGAAGGTGGATTGACCTTAAATGCTCAATCTAGAGCATTGCTTATGCAGAAGCTGGATCGATCTGGCATTGCCACAAGCATTGGAGGGTCCGCTGGTGTGCCCATTGTGAATGGGTCATTTCCTGCTCAACAGTCTGTTAGTTTGCCTAGTGCTCCTGGTTTAATGCCTACACCAACTCCCCCAACACAAATCGTGCCTTCCACTGTAGTGGAACCTGCGGGAAGCCCTAGCGAGTGTCTACTGTTGAAGAATATGTTTGATCCTACCACTGAGACAGAACCAGATTTTGATATTGACATTAAGGAGGATGTAGAAGAGGAATGTTCTAAATTTGGCCGGGTGAAGCATATTTATGTGGACAACAGAAGTGCAGGATTTGTGTATTTGCGGTTTGAATCAGTGGAAGCAGCAAGTGCTGCTCAACGAGCTATGCACATGAGATGGTTTGCACGCAGGTTGATTTCGGCTATTTTCATGGAGCCCGGGCTATATGGAGCCAGGTTTAAACCGGAAGCTTGA 1719 0.4718 MNLEEPMDFDEYDYLEKTVEEQEDRDSKKKKKKMKESSEKGERSYRKLEVDENLDGEENKSKKTRGDEENGSKKDRDDRDRERPGREKERHRSGKERDEEGERERSNREKERDKGMDKDRERDRERRDKERERDGERGRERDKERERERVKREKEERERFRRSRSRSDREREREREPEIRDSRRFRDKKEAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKSGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQPNASTGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPTDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRAIKISCVTDHVGSQDTNAKTADFDDDEGGLTLNAQSRALLMQKLDRSGIATSIGGSAGVPIVNGSFPAQQSVSLPSAPGLMPTPTPPTQIVPSTVVEPAGSPSECLLLKNMFDPTTETEPDFDIDIKEDVEEECSKFGRVKHIYVDNRSAGFVYLRFESVEAASAAQRAMHMRWFARRLISAIFMEPGLYGARFKPEA 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4814g00050 572 MobiDBLite consensus disorder prediction 1 202 - -
Pral4814g00050 572 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 7 568 IPR006509 GO:0003723|GO:0005634|GO:0006397
Pral4814g00050 572 MobiDBLite consensus disorder prediction 18 202 - -
Pral4814g00050 572 MobiDBLite consensus disorder prediction 1 17 - -
Pral4814g00050 572 FunFam Splicing factor CC1-like 289 394 - -
Pral4814g00050 572 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 383 IPR000504 GO:0003723
Pral4814g00050 572 Gene3D - 134 290 IPR012677 -
Pral4814g00050 572 SUPERFAMILY RNA-binding domain, RBD 305 558 IPR035979 GO:0003676
Pral4814g00050 572 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 398 496 IPR029123 -
Pral4814g00050 572 NCBIfam splicing factor, CC1-like family 86 569 IPR006509 GO:0003723|GO:0005634|GO:0006397
Pral4814g00050 572 CDD RRM1_RBM39_like 204 276 - -
Pral4814g00050 572 Gene3D - 301 397 IPR012677 -
Pral4814g00050 572 SUPERFAMILY RNA-binding domain, RBD 196 284 IPR035979 GO:0003676
Pral4814g00050 572 Coils Coil 143 163 - -
Pral4814g00050 572 FunFam Splicing factor CC1-like 127 288 - -
Pral4814g00050 572 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 272 IPR000504 GO:0003723
Pral4814g00050 572 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 501 554 IPR000504 GO:0003723
Pral4814g00050 572 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 377 IPR000504 GO:0003723
Pral4814g00050 572 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 280 IPR000504 GO:0003723
Pral4814g00050 572 Gene3D - 473 571 IPR012677 -
Pral4814g00050 572 SMART rrm1_1 479 556 IPR000504 GO:0003723
Pral4814g00050 572 SMART rrm1_1 306 379 IPR000504 GO:0003723
Pral4814g00050 572 SMART rrm1_1 204 276 IPR000504 GO:0003723
Pral4814g00050 572 CDD RRM3_RBM39_like 477 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4814g00050 Pral-Chr4814 216876 223450 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4814g00050 214 454 Eukaryotic Initiation Factors Gene Family AT3G16380 27.273 5.98e-07 50.4