Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4814g00048 ATGAATTTGGAAGAACCAATGGACTTTGACGAATACGATTACCTGGAGAAGACAGTGGAGGAGCAGGAAGATCGAGATTCGAAGAAGAAGAAGAAGAAGATGAAGGAGAGCAGCGAGAAAGGTGAAAGGAGTTACAGAAAGCTCGAGGTAGATGAGAATCTGGATGGTGAGGAAAATAAGAGCAAGAAGACCAGAGGAGACGAGGAGAATGGGTCAAAGAAGGATCGTGATGACCGCGACAGAGAACGACCTGGCCGCGAAAAGGAGCGCCATAGGAGTGGCAAGGAGAGGGACGAGGAGGGAGAGCGAGAGAGGAGTAATAGAGAGAAGGAGAGAGACAAAGGGATGGATAAGGATAGGGAGAGGGATAGAGAAAGAAGAGACAAAGAGCGGGAGAGGGATGGAGAAAGAGGGAGGGAGAGGGACAAAGAGAGGGAAAGAGAACGGGTGAAAAGGGAGAAGGAGGAGAGAGAGAGGTTCAGGAGAAGCAGAAGTCGTTCTGATAGAGAGAGAGAGAGAGAACGAGAACCGGAAATTAGAGATAGCCGGAGATTCCGAGACAAGAAAGAGGCTGCGGAGCCTGAGGCGGATCCAGAAAGGGATCAGAGAACTGTTTTTGCTTACCAGATGCCCTTAAAGGCCACAGAGAGAGATGTTTATGAATTTTTTTCAAAATCTGGGAAGGTGAGGGATGTCCGTCTCATCATGGATCGGAATTCAAGACGGTCTAAGGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAGTTGCTTCTTGGACAACCTGTAATGGTCAAACCTTCAGAAGCTGAAAAGAACCTTGTTCAGCCTAATGCTTCCACTGGAGCTGCAGGTGTAGCGGGACCATATGGAGCAGTAGACAGGAAACTTTATGTGGGAAACCTTCATTTCAACATGACAGAGAGTCAGCTGAGGGAAATTTTTGAGCCATTTGGTCCGGTGGAGCTTGTGCAACTCCCTACTGACTTGGAGACAGGACATTGCAAGGGTTTTGGCTTTGTTCAATTTGCTCATCTTGAGCATGCCAAAGCAGCCCAGAGTTTAAATGGAAAACTGGAGATTGCTGGTCGGGCTATCAAGATTTCATGTGTGACAGATCATGTTGGAAGCCAAGATACAAATGCGAAAACTGCAGACTTTGATGACGATGAAGGTGGATTGACCTTAAATGCTCAATCTAGAGCATTGCTTATGCAGAAGCTGGATCGATCTGGCATTGCCACAAGCATTGGAGGGTCCGCTGGTGTGCCCATTGTGAATGGGTCATTTCCTGCTCAACAGTCTGTTAGTTTGCCTAGTGCTCCTGGTTTAATGCCTACACCAACTCCCCCAACACAAATCGTGCCTTCCACTGTAGTGGAACCTGCGGGAAGCCCTAGCGAGTGTCTACTGTTGAAGAATATGTTTGATCCTACCACTGAGACAGAACCAGATTTTGATATTGACATTAAGGAGGATGTAGAAGAGGAATGTTCTAAATTTGGCCGGGTGAAGCATATTTATGTGGACAACAATACAGAAGTGCAGGATTTGTGTATTTGCGGTTTGAATCAGTGGAAGCAGCAAGTGCTGCTCAACGAGCTATGCACATGA 1644 0.4696 MNLEEPMDFDEYDYLEKTVEEQEDRDSKKKKKKMKESSEKGERSYRKLEVDENLDGEENKSKKTRGDEENGSKKDRDDRDRERPGREKERHRSGKERDEEGERERSNREKERDKGMDKDRERDRERRDKERERDGERGRERDKERERERVKREKEERERFRRSRSRSDREREREREPEIRDSRRFRDKKEAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKSGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQPNASTGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPTDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRAIKISCVTDHVGSQDTNAKTADFDDDEGGLTLNAQSRALLMQKLDRSGIATSIGGSAGVPIVNGSFPAQQSVSLPSAPGLMPTPTPPTQIVPSTVVEPAGSPSECLLLKNMFDPTTETEPDFDIDIKEDVEEECSKFGRVKHIYVDNNTEVQDLCICGLNQWKQQVLLNELCT 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4814g00048 547 SMART rrm1_1 306 379 IPR000504 GO:0003723
Pral4814g00048 547 SMART rrm1_1 204 276 IPR000504 GO:0003723
Pral4814g00048 547 MobiDBLite consensus disorder prediction 1 202 - -
Pral4814g00048 547 Gene3D - 127 284 IPR012677 -
Pral4814g00048 547 MobiDBLite consensus disorder prediction 18 202 - -
Pral4814g00048 547 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 7 523 IPR006509 GO:0003723|GO:0005634|GO:0006397
Pral4814g00048 547 MobiDBLite consensus disorder prediction 1 17 - -
Pral4814g00048 547 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 383 IPR000504 GO:0003723
Pral4814g00048 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 377 IPR000504 GO:0003723
Pral4814g00048 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 272 IPR000504 GO:0003723
Pral4814g00048 547 Gene3D - 473 532 IPR012677 -
Pral4814g00048 547 SUPERFAMILY RNA-binding domain, RBD 474 522 IPR035979 GO:0003676
Pral4814g00048 547 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 398 496 IPR029123 -
Pral4814g00048 547 Gene3D - 301 397 IPR012677 -
Pral4814g00048 547 CDD RRM1_RBM39_like 204 276 - -
Pral4814g00048 547 Coils Coil 143 163 - -
Pral4814g00048 547 FunFam Splicing factor CC1-like 127 288 - -
Pral4814g00048 547 NCBIfam splicing factor, CC1-like family 86 522 IPR006509 GO:0003723|GO:0005634|GO:0006397
Pral4814g00048 547 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 280 IPR000504 GO:0003723
Pral4814g00048 547 SUPERFAMILY RNA-binding domain, RBD 304 382 IPR035979 GO:0003676
Pral4814g00048 547 FunFam Splicing factor CC1-like 289 394 - -
Pral4814g00048 547 CDD RRM3_RBM39_like 477 522 - -
Pral4814g00048 547 SUPERFAMILY RNA-binding domain, RBD 196 284 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4814g00048 Pral-Chr4814 216876 223450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4814g00048 214 454 Eukaryotic Initiation Factors Gene Family AT3G16380 27.273 9.48e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4814g00048 K13091 - qsa:O6P43_030384 577.4